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[191025_at] cytoskeleton-like protein

Description C43G2.2 /REP_DB=WormBase Gene ID /WP=CE08691 /TR=Q94174 /GB=AAB09108.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=cytoskeleton-like protein
Cluster 6grp_high1_10_10 > 40      4grp_high_8_8 > 03      6grp_total > 41      4grp_total > 12      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 147
(0.1)
P 		202.8
(2.3)
A 		67.5
(-3)
P 		219.3
(3)
P 		152
B 151.8
(3)
P 		67.1
(-3)
A 		83
(-1.9)
P 		147.5
(2.7)
P 		85
C 137.5
(-1.5)
P 		97.1
(-3)
P 		142
(-1.4)
P 		260.4
(3)
P 		163
avr 145.4
(-0.4) 		122.3
(-1.7) 		97.5
(-3) 		209.1
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 129.4
(1.2)
P 		110.1
(0.2)
P 		166.7
(3)
P 		45.3
(-3)
A 		73.2
(-1.6)
A 		47.8
(-2.9)
P 		121
B 117.7
(-0.7)
P 		126.5
(-0.2)
P 		194.2
(3)
P 		132.4
(0)
P 		69.2
(-3)
P 		71.8
(-2.9)
P 		125
C 88.9
(-0.4)
A 		142.1
(2.7)
P 		130.8
(2)
P 		147.7
(3)
P 		43.8
(-3)
A 		107.5
(0.7)
P 		104
avr 112
(-0.1) 		126.2
(0.8) 		163.9
(3) 		108.5
(-0.3) 		62.1
(-3) 		75.7
(-2.2) 		102
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 53.5
(3)
P 		44
(1.4)
A 		17.6
(-3)
P 		32.1
(-0.6)
P 		36
B 48.4
(3)
P 		16.6
(-3)
A 		19.2
(-2.5)
P 		31.4
(-0.2)
P 		32
C 45.5
(1.9)
P 		27.9
(-3)
P 		49.5
(3)
P 		43.9
(1.4)
P 		22
avr 49.1
(3) 		29.5
(-2.8) 		28.8
(-3) 		35.8
(-0.9) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 23.9
(-0.3)
P 		39.2
(3)
P 		36.3
(2.4)
P 		11.5
(-3)
A 		22.1
(-0.7)
A 		11.6
(-3)
P 		28
B 41
(1.2)
P 		42.1
(1.5)
P 		47.2
(3)
P 		35.1
(-0.6)
P 		28.1
(-2.6)
P 		26.8
(-3)
P 		20
C 33
(0.9)
A 		43.3
(3)
P 		33.3
(0.9)
P 		29.7
(0.2)
P 		14.2
(-3)
A 		36
(1.5)
P 		29
avr 32.6
(0.3) 		41.5
(3) 		38.9
(2.2) 		25.4
(-1.8) 		21.5
(-3) 		24.8
(-2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191025_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10502
Sequence Type Exemplar sequence
Representative Public ID C43G2.2 NCBI
Target Description C43G2.2 /REP_DB=WormBase Gene ID /WP=CE08691 /TR=Q94174 /GB=AAB09108.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=cytoskeleton-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068600 NCBI Caenorhabditis elegans C43G2.2 (C43G2.2) mRNA, complete cds. 11/11 None
C43G2.2 ENSEMBL cdna:known chromosome:CEL140:IV:6565884:6572312:-1 gene:C43G2.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004604 6/11 Cross Hyb Matching Probes None
SNAP00000004605 3/11 Cross Hyb Matching Probes None
GENEFINDER00000004610 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6565889-6572318(-) 100.0 100.0
Public Domain and Genome References
Gene Title cytoskeleton-like protein
Ensembl C43G2.2
Entrez Gene 183417 Entrez gene
SwissProt Q94174 EMBL-EBI
WormBase CE08691 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.21044.1.S1_S_AT similar to bicaudal D homolog 2 isoform 1 cfa
CANINE_2:CFAAFFX.4303.1.S1_S_AT similar to bicaudal D homolog 2 isoform 1 cfa
DROSOPHILA_2:1630650_AT Bicaudal D dm
DROSGENOME1:153897_AT Bicaudal D dm
CHICKEN:GGAAFFX.3284.1.S1_AT similar to mKIAA0699 protein gga
HG-U133_PLUS_2:209203_S_AT bicaudal D homolog 2 (Drosophila) hs
HG-U133A:209203_S_AT bicaudal D homolog 2 (Drosophila) hs
HG-U133A_2:209203_S_AT bicaudal D homolog 2 (Drosophila) hs
HU35KSUBB:RC_W15417_AT bicaudal D homolog 2 (Drosophila) hs
HU35KSUBD:RC_AA258478_AT bicaudal D homolog 2 (Drosophila) hs
U133_X3P:G12803052_3P_S_AT bicaudal D homolog 2 (Drosophila) hs
U133_X3P:HS2.330988.1.S1_3P_S_AT bicaudal D homolog 2 (Drosophila) hs
U133_X3P:HS.330988.0.S1_3P_S_AT bicaudal D homolog 2 (Drosophila) hs
U133_X3P:HS.330988.0.S1_3P_AT bicaudal D homolog 2 (Drosophila) hs
U133_X3P:HS.17411.1.S2_3P_S_AT bicaudal D homolog 2 (Drosophila) hs
U133_X3P:212702_3P_S_AT bicaudal D homolog 2 (Drosophila) hs
HG-U133_PLUS_2:1553021_S_AT bicaudal D homolog 2 (Drosophila) hs
HG-U133A_2:212702_S_AT bicaudal D homolog 2 (Drosophila) hs
HG-U133_PLUS_2:212702_S_AT bicaudal D homolog 2 (Drosophila) hs
HG-U133A:212702_S_AT bicaudal D homolog 2 (Drosophila) hs
HG-U133A_2:213154_S_AT bicaudal D homolog 2 (Drosophila) hs
HG-U133_PLUS_2:213154_S_AT bicaudal D homolog 2 (Drosophila) hs
HG-U133A:213154_S_AT bicaudal D homolog 2 (Drosophila) hs
HG-U95AV2:40879_AT bicaudal D homolog 2 (Drosophila) hs
HU35KSUBA:Z20481_AT Bicaudal D homolog 2 (Drosophila) hs
MOUSE430A_2:1437491_AT bicaudal D homolog 2 (Drosophila) mm
MOE430A:1437491_AT bicaudal D homolog 2 (Drosophila) mm
MOUSE430_2:1437491_AT bicaudal D homolog 2 (Drosophila) mm
MG-U74BV2:115072_AT bicaudal D homolog 2 (Drosophila) mm
MG-U74BV2:115073_G_AT bicaudal D homolog 2 (Drosophila) mm
MG-U74CV2:134078_AT bicaudal D homolog 2 (Drosophila) mm
MOE430A:1450733_AT bicaudal D homolog 2 (Drosophila) mm
MOUSE430A_2:1450733_AT bicaudal D homolog 2 (Drosophila) mm
MOUSE430_2:1450733_AT bicaudal D homolog 2 (Drosophila) mm
MOE430A:1450732_A_AT bicaudal D homolog 2 (Drosophila) mm
MOUSE430A_2:1450732_A_AT bicaudal D homolog 2 (Drosophila) mm
MOUSE430_2:1450732_A_AT bicaudal D homolog 2 (Drosophila) mm
MOE430A:1422745_AT bicaudal D homolog 2 (Drosophila) mm
MOUSE430A_2:1422745_AT bicaudal D homolog 2 (Drosophila) mm
MOUSE430_2:1422745_AT bicaudal D homolog 2 (Drosophila) mm
MOE430A:1422746_S_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MOUSE430A_2:1422746_S_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MOUSE430_2:1422746_S_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MOE430B:1437875_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MOUSE430_2:1437875_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MU19KSUBA:TC14551_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MU19KSUBA:TC21351_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MU19KSUBA:TC21351_G_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MU19KSUBC:TC35943_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MU19KSUBC:TC38209_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MU19KSUBC:TC38489_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
MU19KSUBC:TC41953_AT Bicaudal D homolog 2 (Drosophila), mRNA (cDNA clone MGC:38246 IMAGE:5324113) mm
RG-U34A:RC_AA891724_AT bicaudal D homolog 2 (Drosophila) rn
RAE230A:1383822_AT bicaudal D homolog 2 (Drosophila) rn
RAT230_2:1383822_AT bicaudal D homolog 2 (Drosophila) rn
Protein Similarities
Method ID Description E-Value
blast AAB09108 Hypothetical protein C43G2.2 [Caenorhabditis elegans] ref|NP_501001.1| C43G2.2 [Caenorhabditis elegans] 0.0
blast CAE61513 Hypothetical protein CBG05413 [Caenorhabditis briggsae] 0.0
blast EAL39298 ENSANGP00000027554 [Anopheles gambiae str. PEST] ref|XP_554113.1| ENSANGP00000027554 [Anopheles gambiae str. PEST] 9.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501001.1 1 843-865
C43G2.2 1 843-865
Sequence
Target Sequence 
>C. ELEGANS:191025_AT
gaagctcacattgactcaacgtttagaagaggttgaagttgatcgggataggcaggtatt
taagaggagtagtacaagagctccaactagagagaaaaatctcaacagacgatactccgc
ctttaattatgttcactgtttcaaaacattcacaaaaaaatacctaccagccaccgagag
cagttcgttatccgggttcaacaacaacagctcaacagccagcaccttcatcttcggggg
gctcgaggggagggccacgcaggggagacaatcagcaataagctggtggtcaggtgatga
cgtgacaacgatgagaagacgacgaacacctacaccagaggatccaaatgatcaagaatc
aattaatacacaaaaccacgtcatcaccacgtggccctacgacctgaaaaatgaagaaga
tccccaattattgattgatttaatgatggaagagatgagagttgaatctgaaattgaaag
aatgcgattagcacttaaagaacaagaatcgatattcgctgattgtcaatttgttattgc
tcttttctcactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCACATTGACTCAACGTTTA 164 343 2013 Antisense
TCAACAGACGATACTCCGCCTTTAA 44 631 2114 Antisense
CTCCGCCTTTAATTATGTTCACTGT 566 233 2127 Antisense
CCAGCCACCGAGAGCAGTTCGTTAT 111 273 2179 Antisense
GCAGTTCGTTATCCGGGTTCAACAA 329 299 2192 Antisense
GAGAAGACGACGAACACCTACACCA 470 389 2325 Antisense
CGAACACCTACACCAGAGGATCCAA 326 253 2335 Antisense
AATACACAAAACCACGTCATCACCA 180 171 2377 Antisense
CGTGGCCCTACGACCTGAAAAATGA 176 241 2402 Antisense
ATCGATATTCGCTGATTGTCAATTT 372 35 2520 Antisense
ATTTGTTATTGCTCTTTTCTCACTT 165 19 2541 Antisense
Sequence Source Affymetrix Proprietary Database