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[191024_at] 7TM chemoreceptor, srd family

Description C39H7.6 /REP_DB=WormBase Gene ID /WP=CE25807 /GEN=srd-12 /TR=Q18552 /GB=AAK72081.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 87      4grp_total > 02      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 65.6
(-3)
A 		68.8
(-2.9)
A 		67.8
(-2.9)
A 		207.8
(3)
P 		142
B 69.2
(-2.9)
A 		65.5
(-3)
A 		88.2
(-2.5)
A 		315.8
(3)
P 		250
C 57.6
(-2.5)
P 		74.7
(-2.2)
A 		32.1
(-3)
A 		364.8
(3)
P 		333
avr 64.1
(-3) 		69.7
(-2.8) 		62.7
(-3) 		296.1
(3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 58.2
(-0.6)
A 		26.1
(-3)
A 		47.1
(-1.4)
A 		57.5
(-0.6)
A 		75.3
(0.7)
P 		105.1
(3)
P 		79
B 55.3
(-0.7)
A 		45.2
(-1.5)
A 		39.4
(-2)
A 		27.7
(-3)
A 		57.4
(-0.5)
A 		99.7
(3)
P 		72
C 41.1
(-3)
A 		68.5
(2)
A 		49.3
(-1.5)
A 		74.2
(3)
A 		65.5
(1.4)
A 		55.6
(-0.4)
P 		33
avr 51.5
(-2.1) 		46.6
(-2.8) 		45.3
(-3) 		53.1
(-1.9) 		66.1
(0) 		86.8
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 23.9
(0.5)
A 		14.9
(-3)
A 		17.7
(-1.9)
A 		30.4
(3)
P 		16
B 22.1
(-2.3)
A 		16.2
(-3)
A 		20.4
(-2.5)
A 		67.3
(3)
P 		51
C 19.1
(-2.1)
P 		21.5
(-1.8)
A 		11.2
(-3)
A 		61.5
(3)
P 		50
avr 21.7
(-2.1) 		17.5
(-2.8) 		16.4
(-3) 		53.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 10.7
(-2.5)
A 		9.3
(-3)
A 		10.3
(-2.6)
A 		14.6
(-1)
A 		22.7
(1.9)
P 		25.6
(3)
P 		16
B 19.2
(-0.6)
A 		15.1
(-1.4)
A 		9.6
(-2.5)
A 		7.3
(-3)
A 		23.3
(0.2)
A 		37.2
(3)
P 		30
C 15.2
(-1.2)
A 		20.9
(2.8)
A 		12.6
(-3)
A 		14.9
(-1.4)
A 		21.2
(3)
A 		18.6
(1.2)
P 		9
avr 15
(-1.5) 		15.1
(-1.4) 		10.8
(-3) 		12.3
(-2.4) 		22.4
(1.3) 		27.1
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191024_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11127
Sequence Type Exemplar sequence
Representative Public ID C39H7.6 NCBI
Target Description C39H7.6 /REP_DB=WormBase Gene ID /WP=CE25807 /GEN=srd-12 /TR=Q18552 /GB=AAK72081.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068435(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068435 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-12) (srd-12) mRNA, complete cds. 11/11 None
SNAP00000020749 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5628777:5630167:-1 11/11 None
GENEFINDER00000020752 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5628777:5630224:-1 11/11 None
C39H7.6 ENSEMBL cdna:known chromosome:CEL140:IV:5628777:5630224:-1 gene:C39H7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5628782-5630230(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-12
Ensembl C39H7.6
Entrez Gene 191802 Entrez gene
SwissProt Q18552 EMBL-EBI
WormBase CE25807 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK72081 Serpentine receptor, class d (delta) protein 12 [Caenorhabditis elegans] ref|NP_500836.1| Serpentine Receptor, class D (delta) family member (srd-12) [Caenorhabditis elegans] 1.0E-158
blast T30151 hypothetical protein C39H7.6 - Caenorhabditis elegans 1.0E-153
blast AAK72081 Serpentine receptor, class d (delta) protein 12 [Caenorhabditis elegans] ref|NP_500836.1| Serpentine Receptor, class D (delta) family member (srd-12) [Caenorhabditis elegans] 1.0E-147
blast T30151 hypothetical protein C39H7.6 - Caenorhabditis elegans 1.0E-142
blast CAE72686 Hypothetical protein CBG19906 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500836.1 7 10-32,45-67,91-113,126-148,184-206,233-255,270-292
C39H7.6 7 10-32,45-67,91-113,126-148,184-206,233-255,270-292
SNAP00000020749 6 21-43,72-94,107-129,165-187,214-236,251-273
GENEFINDER00000020752 7 10-32,45-67,91-113,126-148,184-206,233-255,270-292
Sequence
Target Sequence 
>C. ELEGANS:191024_AT
tcacactcttgtcattctcttaatgattatctacattccatccctttttcaatggatctc
cttcatctggtctcaggacgatccagaagagattcgagagattctccacgtcgcatttcc
agcttacaatctgacaggacacgttgtcactggaaccaagaatatattatgtttctcggc
tctttacacaattcttcacatgactattccaattactccagtttacgtctgcattctgat
tttgagaagaaaaattatttcaagactgagttatcagggagtcaacatcacaagtgacac
caaaaatttgcactctcaacttttgatggctttaacctatcaagcagcaattcctggatt
ctacttgttcagtatttactcatatgccattggacaatttggaatctacaatcatccagc
tcttgaatatttcacattttcctcatttcttctgattccatttttatcgcctcttgcctc
tttcattttcgtaactccctatcgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACACTCTTGTCATTCTCTTAATG 115 629 387 Antisense
CTACATTCCATCCCTTTTTCAATGG 142 227 417 Antisense
TTCAATGGATCTCCTTCATCTGGTC 607 685 434 Antisense
GATTCGAGAGATTCTCCACGTCGCA 217 433 477 Antisense
GTCGCATTTCCAGCTTACAATCTGA 92 475 496 Antisense
GGACACGTTGTCACTGGAACCAAGA 328 525 523 Antisense
ATATATTATGTTTCTCGGCTCTTTA 598 19 548 Antisense
TACTCCAGTTTACGTCTGCATTCTG 440 647 600 Antisense
GCAATTCCTGGATTCTACTTGTTCA 482 323 733 Antisense
GAATATTTCACATTTTCCTCATTTC 50 327 811 Antisense
CATTTTCGTAACTCCCTATCGACAA 515 215 870 Antisense
Sequence Source Affymetrix Proprietary Database