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[191023_at] 7TM chemoreceptor, srh family

Description T10D4.5 /REP_DB=WormBase Gene ID /WP=CE20045 /GEN=srh-71 /TR=Q9TZF4 /GB=AAC68713.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 09      4grp_total > 18      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 11.4
(-2.8)
A 		13.1
(-2.5)
A 		9.6
(-3)
A 		55.9
(3)
A 		46
B 8
(-2.7)
A 		16.2
(3)
A 		9.3
(-1.8)
A 		7.6
(-3)
A 		9
C 5.2
(-3)
A 		17.8
(-1)
A 		8.5
(-2.5)
A 		43.4
(3)
A 		38
avr 8.2
(-3) 		15.7
(-1.4) 		9.1
(-2.8) 		35.6
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 18.3
(3)
A 		5.6
(-3)
A 		13.1
(0.5)
A 		9.1
(-1.3)
A 		10.6
(-0.6)
A 		9.8
(-1)
A 		13
B 14.2
(3)
A 		9.4
(-0.5)
A 		11.1
(0.8)
A 		12.7
(1.9)
A 		8.6
(-1)
A 		5.9
(-3)
A 		8
C 9.9
(-2.1)
A 		8.4
(-2.9)
A 		9.7
(-2.2)
A 		20
(3)
A 		10.5
(-1.8)
A 		8.2
(-3)
A 		12
avr 14.1
(3) 		7.8
(-3) 		11.3
(0.3) 		13.9
(2.8) 		9.9
(-1) 		8
(-2.8) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.1
(-1.3)
A 		2.8
(-2.7)
A 		2.5
(-3)
A 		8.2
(3)
A 		6
B 2.5
(-0.8)
A 		4
(3)
A 		2.2
(-1.5)
A 		1.6
(-3)
A 		2
C 1.7
(-3)
A 		5.1
(0.6)
A 		3
(-1.6)
A 		7.3
(3)
A 		6
avr 2.8
(-2.6) 		4
(-0.3) 		2.6
(-3) 		5.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.4
(3)
A 		2
(-3)
A 		2.9
(0.9)
A 		2.3
(-1.7)
A 		3.2
(2.1)
A 		2.4
(-1.3)
A 		1
B 5
(3)
A 		3.1
(-1.1)
A 		2.7
(-1.9)
A 		3.4
(-0.4)
A 		3.5
(-0.2)
A 		2.2
(-3)
A 		3
C 3.7
(1.8)
A 		2.6
(-2.6)
A 		2.5
(-3)
A 		4
(3)
A 		3.4
(0.6)
A 		2.8
(-1.8)
A 		2
avr 4
(3) 		2.6
(-2.6) 		2.7
(-2.2) 		3.2
(-0.2) 		3.4
(0.6) 		2.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191023_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5773
Sequence Type Exemplar sequence
Representative Public ID T10D4.5 NCBI
Target Description T10D4.5 /REP_DB=WormBase Gene ID /WP=CE20045 /GEN=srh-71 /TR=Q9TZF4 /GB=AAC68713.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062052(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062052 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-71) (srh-71) mRNA, complete cds. 11/11 None
GENEFINDER00000032470 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3123501:3125162:1 9/11 None
T10D4.5 ENSEMBL cdna:known chromosome:CEL140:II:3123501:3124894:1 gene:T10D4.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032455 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3123499-3124893(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-71
Ensembl T10D4.5
Entrez Gene 191868 Entrez gene
SwissProt Q9TZF4 EMBL-EBI
WormBase CE20045 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC68713 Serpentine receptor, class h protein 71 [Caenorhabditis elegans] ref|NP_494453.1| Serpentine Receptor, class H family member (srh-71) [Caenorhabditis elegans] 0.0
blast AAC68713 Serpentine receptor, class h protein 71 [Caenorhabditis elegans] ref|NP_494453.1| Serpentine Receptor, class H family member (srh-71) [Caenorhabditis elegans] 1.0E-168
blast CAD56599 Hypothetical protein T21B4.14 [Caenorhabditis elegans] ref|NP_496670.2| Serpentine Receptor, class H family member (srh-73) [Caenorhabditis elegans] 6.0E-91
blast T25056 hypothetical protein T21B4.10 - Caenorhabditis elegans 6.0E-91
blast CAD56599 Hypothetical protein T21B4.14 [Caenorhabditis elegans] ref|NP_496670.2| Serpentine Receptor, class H family member (srh-73) [Caenorhabditis elegans] 6.0E-81
blast T25056 hypothetical protein T21B4.10 - Caenorhabditis elegans 6.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494453.1 7 32-54,66-88,110-132,153-172,220-242,259-281,296-318
T10D4.5 7 32-54,66-88,110-132,153-172,220-242,259-281,296-318
GENEFINDER00000032470 6 32-54,66-88,110-132,153-172,220-242,259-281
Sequence
Target Sequence 
>C. ELEGANS:191023_AT
aaacgtcgactcgagcttgtctacttgctttgagctatattagcgatatgctcccactga
caccaatatttttgaatcttccagagcagaacagggcgagacggattgttttagagagcc
atccctgcccgacgaaagggttcttcctcgaacccgcgtttgtcttcgccgccgaaggat
ttttcgagacctacatgctcatggctcgtcgatccatatacttcttcagaacactaaaaa
ttctattcttctcctcctgtagtatatactacctcttcatctctaaatcctctcgagtat
ccgctcaaactcgtcagctacaaattcgttccttcgtaggaatagttattcaattttgta
tcccaacgattttcatcatagcgccactaattttattgttacaaaaggacaagaataatg
gtgggtatagccaaattgaaaacactattctgtcagttaattttgtgcttcatagctttg
tgggtagtctgtcaactctactagtacatggcccgtatcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACGTCGACTCGAGCTTGTCTACT 305 127 455 Antisense
TATTAGCGATATGCTCCCACTGACA 569 663 492 Antisense
ATTGTTTTAGAGAGCCATCCCTGCC 188 3 559 Antisense
CGAGACCTACATGCTCATGGCTCGT 166 251 639 Antisense
ATTCTTCTCCTCCTGTAGTATATAC 605 11 699 Antisense
TAGTATATACTACCTCTTCATCTCT 638 653 714 Antisense
CTCTAAATCCTCTCGAGTATCCGCT 243 229 735 Antisense
CGTCAGCTACAAATTCGTTCCTTCG 250 245 766 Antisense
AACGATTTTCATCATAGCGCCACTA 688 141 819 Antisense
GTGGGTAGTCTGTCAACTCTACTAG 116 489 934 Antisense
TCTACTAGTACATGGCCCGTATCGG 640 611 951 Antisense
Sequence Source Affymetrix Proprietary Database