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[191019_at] 7TM chemoreceptor, srh family

Description K04F1.16 /REP_DB=WormBase Gene ID /WP=CE26374 /GEN=srh-5 /TR=Q9TXK5 /GB=AAD56300.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 30      4grp_total > 30      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 33.7
(3)
A 		11.5
(-1.7)
A 		5.6
(-3)
A 		26.1
(1.4)
A 		28
B 32.5
(3)
A 		7.9
(-2.3)
A 		4.7
(-3)
A 		18.8
(0)
A 		28
C 35
(3)
A 		25.2
(1.1)
A 		3.6
(-3)
A 		18
(-0.2)
A 		31
avr 33.7
(3) 		14.9
(-0.9) 		4.6
(-3) 		21
(0.4) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 8.8
(-1.5)
A 		2
(-3)
A 		21.4
(1.2)
A 		2.5
(-2.9)
A 		29.7
(3)
A 		1.9
(-3)
A 		28
B 28.8
(3)
A 		4.5
(-3)
A 		8.1
(-2.1)
A 		8.2
(-2.1)
A 		4.7
(-3)
A 		22.5
(1.4)
A 		24
C 7.1
(-2.7)
A 		51.4
(3)
A 		32.2
(0.5)
A 		50.7
(2.9)
A 		4.9
(-3)
A 		7
(-2.7)
A 		47
avr 14.9
(-0.4) 		19.3
(2.2) 		20.6
(3) 		20.5
(2.9) 		13.1
(-1.5) 		10.5
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.3
(3)
A 		2.5
(-2.4)
A 		1.5
(-3)
A 		3.8
(-1.7)
A 		11
B 10.4
(3)
A 		1.9
(-2.5)
A 		1.1
(-3)
A 		4
(-1.1)
A 		9
C 11.6
(3)
A 		7.2
(0.5)
A 		1.2
(-3)
A 		3
(-2)
A 		10
avr 11.4
(3) 		3.9
(-1.5) 		1.3
(-3) 		3.6
(-1.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.6
(-2.2)
A 		0.7
(-2.9)
A 		4.7
(-0)
A 		0.6
(-2.9)
A 		9
(3)
A 		0.5
(-3)
A 		9
B 10
(3)
A 		1.5
(-3)
A 		2
(-2.6)
A 		2.2
(-2.5)
A 		1.9
(-2.7)
A 		8.4
(1.9)
A 		9
C 2.6
(-2.6)
A 		15.7
(3)
A 		8.2
(-0.2)
A 		10.2
(0.7)
A 		1.6
(-3)
A 		2.4
(-2.7)
A 		14
avr 4.7
(-0.5) 		6
(3) 		5
(0.3) 		4.3
(-1.6) 		4.2
(-1.9) 		3.8
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191019_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15869
Sequence Type Exemplar sequence
Representative Public ID K04F1.16 NCBI
Target Description K04F1.16 /REP_DB=WormBase Gene ID /WP=CE26374 /GEN=srh-5 /TR=Q9TXK5 /GB=AAD56300.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071081(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071081 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-5) (srh-5) mRNA, complete cds. 11/11 None
K04F1.16 ENSEMBL cdna:known chromosome:CEL140:V:1685457:1686693:1 gene:K04F1.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1685456-1686693(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-5
Ensembl K04F1.16
Entrez Gene 191842 Entrez gene
SwissProt Q9TXK5 EMBL-EBI
WormBase CE26374 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD56300 Serpentine receptor, class h protein 5 [Caenorhabditis elegans] ref|NP_503482.1| Serpentine Receptor, class H family member (srh-5) [Caenorhabditis elegans] 0.0
blast AAF39926 Serpentine receptor, class h protein 7 [Caenorhabditis elegans] ref|NP_504118.1| Serpentine Receptor, class H family member (srh-7) [Caenorhabditis elegans] 1.0E-106
blast AAF39919 Serpentine receptor, class h protein 8 [Caenorhabditis elegans] ref|NP_504117.1| Serpentine Receptor, class H family member (srh-8) [Caenorhabditis elegans] 1.0E-104
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503482.1 7 15-37,50-72,92-114,134-156,196-218,241-263,278-300
K04F1.16 7 15-37,50-72,92-114,134-156,196-218,241-263,278-300
Sequence
Target Sequence 
>C. ELEGANS:191019_AT
ggattttatatcggtgcgcttctgataacactgtttgcaattttaatctatccagacttg
aagtatcaaaaatcttataaaatgaaaatggagcagagatttggcacattttcggggtac
atgtggtgtgataattgttttttcatgaactttgattccaatattttcaagatattttat
ttaatttgtggaatcggaacagttatgtgtttttcatcgtctttctccgcatttactgcg
acgattcgatatttgaattcggtgaaaatcaaattatccgtaaaaacagcagctctacac
agaaactttttgcatagtctgatactaacaatcacagtgcatataatatgtattctatgt
cctgttttgatatttttgggtgcaatttcggttgttgtcgagttatcacagttcccatac
attccctacattcttttgatgatcattcaagagcacggagcagcatctacagtaaccatg
ttcttaacaaataatctactacgacagacaatacgaaaaatgctccccgtccgtcaactc
gaagccgtatctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTTTATATCGGTGCGCTTCTGA 646 509 427 Antisense
GTGCGCTTCTGATAACACTGTTTGC 340 479 440 Antisense
GATTTGGCACATTTTCGGGGTACAT 271 421 524 Antisense
TCTTTCTCCGCATTTACTGCGACGA 544 615 646 Antisense
AACAGCAGCTCTACACAGAAACTTT 562 135 711 Antisense
TATGTATTCTATGTCCTGTTTTGAT 185 655 773 Antisense
GGGTGCAATTTCGGTTGTTGTCGAG 326 497 804 Antisense
GAGTTATCACAGTTCCCATACATTC 235 399 826 Antisense
CAGCATCTACAGTAACCATGTTCTT 703 203 887 Antisense
CAATACGAAAAATGCTCCCCGTCCG 283 173 935 Antisense
TCCGTCAACTCGAAGCCGTATCTAC 75 595 956 Antisense
Sequence Source Affymetrix Proprietary Database