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[191018_at]

Description C14C10.2 /REP_DB=WormBase Gene ID /WP=CE28432 /TR=Q17972 /GB=CAA98426.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 47      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 81      6grp_total > 47      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 283
1 2 3 4 range
A 297.6
(1.2)
P 		194.8
(-2.5)
P 		179.6
(-3)
P 		346.8
(3)
P 		167
B 265.6
(-1)
P 		236.7
(-1.8)
P 		190.6
(-3)
P 		420.6
(3)
P 		230
C 311.5
(0.1)
P 		201.7
(-2.3)
P 		166.7
(-3)
P 		449.7
(3)
P 		283
avr 291.6
(-0) 		211.1
(-2.2) 		179
(-3) 		405.7
(3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 218.9
(-2.8)
P 		271.8
(0.9)
P 		300.6
(3)
P 		240
(-1.3)
P 		216.7
(-3)
P 		260.2
(0.1)
P 		84
B 334.1
(3)
P 		263.3
(-1)
P 		282.7
(0.1)
P 		268.8
(-0.7)
P 		228.3
(-3)
P 		321.4
(2.3)
P 		106
C 293.5
(2)
P 		271.4
(1)
P 		177.3
(-3)
P 		221.5
(-1.1)
P 		264
(0.7)
P 		317
(3)
P 		140
avr 282.2
(1.4) 		268.8
(0.1) 		253.5
(-1.4) 		243.4
(-2.3) 		236.3
(-3) 		299.5
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 108.4
(3)
P 		42.3
(-3)
P 		47
(-2.6)
P 		50.8
(-2.2)
P 		66
B 84.7
(2.4)
P 		58.5
(-1.1)
P 		44.2
(-3)
P 		89.6
(3)
P 		45
C 103.1
(3)
P 		58
(-3)
P 		58.1
(-3)
P 		75.8
(-0.6)
P 		45
avr 98.7
(3) 		52.9
(-2.6) 		49.8
(-3) 		72.1
(-0.3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 40.4
(-3)
P 		96.7
(3)
P 		65.5
(-0.3)
P 		60.9
(-0.8)
P 		65.4
(-0.3)
P 		63.3
(-0.6)
P 		56
B 116.3
(2.6)
P 		87.6
(-0.8)
P 		68.6
(-3)
P 		71.2
(-2.7)
P 		92.8
(-0.2)
P 		119.8
(3)
P 		51
C 108.8
(3)
P 		82.8
(0.6)
P 		45.1
(-2.9)
P 		44.5
(-3)
P 		85.4
(0.8)
P 		106.1
(2.7)
P 		64
avr 88.5
(1.7) 		89
(1.8) 		59.7
(-2.9) 		58.9
(-3) 		81.2
(0.6) 		96.4
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191018_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14683
Sequence Type Exemplar sequence
Representative Public ID C14C10.2 NCBI
Target Description C14C10.2 /REP_DB=WormBase Gene ID /WP=CE28432 /TR=Q17972 /GB=CAA98426.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073749
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000017650 ENSEMBL cdna:SNAP chromosome:CEL140:V:12592579:12595065:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073749 4/11 Cross Hyb Matching Probes None
NM_073748 6/11 Cross Hyb Matching Probes None
GENEFINDER00000017656 4/11 Cross Hyb Matching Probes None
GENEFINDER00000017659 6/11 Cross Hyb Matching Probes None
C14C10.7 6/11 Cross Hyb Matching Probes None
C14C10.2 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12592398-12595050(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98426 Hypothetical protein C14C10.2 [Caenorhabditis elegans] ref|NP_506150.1| C14C10.2 [Caenorhabditis elegans] 1.0E-158
blast CAE75519 Hypothetical protein CBG23537 [Caenorhabditis briggsae] 9.0E-90
blast CAC70073 Hypothetical protein C14C10.7 [Caenorhabditis elegans] ref|NP_506149.1| C14C10.7 [Caenorhabditis elegans] 1.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 6.8E-30
Sequence
Target Sequence 
>C. ELEGANS:191018_AT
ttaaaccgtccacattgagatcccttcaacttttcattcgatttaatgagatgccacgcc
tggaaattgcagattactgtaagagaaactcagttacactatctcatgaagatgcgatgt
tctttattaacttggctggaaaacttaaatatccaatgcctctaatccgcctcctcgaaa
ttcatcaattcattcaaattccaacttcgacgttcttttcaattttcgatgagctcatca
agttagccggagtcctaatctgtgggagtgagccagctgccaatgttcgcataaagctgt
gggacgaagattctggccctgatccagatgatcttcttgatcagggatactcaacttcaa
atggaagcttcttcttatctggatggactacagagactacaccaattgatcctgttttca
aaatttaccacgattgcaatgatgaacgattgccgactcatcgaaaagtaaagttcacaa
tccccgacaaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAAACCGTCCACATTGAGATCCCT 47 683 611 Antisense
ATCCCTTCAACTTTTCATTCGATTT 174 39 630 Antisense
GAGATGCCACGCCTGGAAATTGCAG 40 397 658 Antisense
GAAACTCAGTTACACTATCTCATGA 145 357 695 Antisense
GTTAGCCGGAGTCCTAATCTGTGGG 483 445 852 Antisense
ATCTGTGGGAGTGAGCCAGCTGCCA 381 33 868 Antisense
AGCCAGCTGCCAATGTTCGCATAAA 689 81 881 Antisense
GTGGGACGAAGATTCTGGCCCTGAT 245 489 909 Antisense
GGCCCTGATCCAGATGATCTTCTTG 119 543 925 Antisense
GAAGCTTCTTCTTATCTGGATGGAC 671 341 974 Antisense
TAAAGTTCACAATCCCCGACAAATA 320 637 1079 Antisense
Sequence Source Affymetrix Proprietary Database