[Home] | [Total List]

[191017_at] serine carboxypeptidase

Description Y40D12A.2 /REP_DB=WormBase Gene ID /WP=CE19621 /TR=O76725 /GB=AAC26946.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=serine carboxypeptidase
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 01      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 12      6grp_total > 08      4grp_total > 56      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3325
1 2 3 4 range
A 2526.7
(-0.9)
P 		2807.7
(-0.2)
P 		4088.3
(3)
P 		1701.9
(-3)
P 		2386
B 2734.7
(-0.5)
P 		3110.5
(0.1)
P 		4693.5
(3)
P 		1368.4
(-3)
P 		3325
C 2386.4
(-0.9)
P 		3124.6
(0.7)
P 		4162.5
(3)
P 		1434.9
(-3)
P 		2728
avr 2549.3
(-0.8) 		3014.3
(0.2) 		4314.8
(3) 		1501.7
(-3) 		2813

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1808
1 2 3 4 5 6 range
A 2945.8
(3)
P 		2065.2
(-0.3)
P 		2019
(-0.4)
P 		2514.2
(1.4)
P 		1331.1
(-3)
P 		1782.2
(-1.3)
P 		1615
B 2554.7
(3)
P 		1521.8
(-1.4)
P 		1922.2
(0.3)
P 		1969.7
(0.5)
P 		1138.3
(-3)
P 		1534.4
(-1.3)
P 		1416
C 2541.5
(2.8)
P 		1661.6
(-0.9)
P 		2599.1
(3)
P 		1662.2
(-0.9)
P 		1160.4
(-3)
P 		1839.7
(-0.2)
P 		1439
avr 2680.7
(3) 		1749.5
(-0.8) 		2180.1
(1) 		2048.7
(0.4) 		1209.9
(-3) 		1718.8
(-0.9) 		1471
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1209
1 2 3 4 range
A 920
(1.9)
P 		609.5
(-0.4)
P 		1068.8
(3)
P 		249.1
(-3)
P 		820
B 872.1
(1.4)
P 		768.2
(0.6)
P 		1087.6
(3)
P 		291.6
(-3)
P 		796
C 790
(-0.3)
P 		898.3
(0.3)
P 		1450.8
(3)
P 		241.9
(-3)
P 		1209
avr 860.7
(0.8) 		758.7
(0.2) 		1202.4
(3) 		260.9
(-3) 		942

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 543
(-0.5)
P 		734.5
(3)
P 		439.7
(-2.3)
P 		637.7
(1.3)
P 		401.7
(-3)
P 		433.9
(-2.4)
P 		333
B 888.9
(3)
P 		506.5
(-2.4)
P 		466.8
(-2.9)
P 		521.7
(-2.2)
P 		462.5
(-3)
P 		572.2
(-1.5)
P 		426
C 942
(3)
P 		507
(-1.3)
P 		661.5
(0.2)
P 		334.3
(-3)
P 		375.5
(-2.6)
P 		615.8
(-0.2)
P 		608
avr 791.3
(3) 		582.7
(-0.3) 		522.7
(-1.3) 		497.9
(-1.7) 		413.2
(-3) 		540.6
(-1) 		378
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7923
Sequence Type Exemplar sequence
Representative Public ID Y40D12A.2 NCBI
Target Description Y40D12A.2 /REP_DB=WormBase Gene ID /WP=CE19621 /TR=O76725 /GB=AAC26946.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=serine carboxypeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066059 NCBI Caenorhabditis elegans Y40D12A.2 (Y40D12A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000007328 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6610910:6615232:1 11/11 None
SNAP00000007326 ENSEMBL cdna:SNAP chromosome:CEL140:III:6612488:6617180:1 11/11 None
Y40D12A.2 ENSEMBL cdna:known chromosome:CEL140:III:6612458:6615069:1 gene:Y40D12A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6612486-6615000(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine carboxypeptidase
Ensembl Y40D12A.2
Entrez Gene 175938 Entrez gene
SwissProt O76725 EMBL-EBI
WormBase CE19621 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19627_S_AT serine carboxypeptidase S10 family protein at
ATGENOME1:19626_I_AT serine carboxypeptidase S10 family protein at
ATH1-121501:265795_AT serine carboxypeptidase S10 family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4185 serine carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26946 Hypothetical protein Y40D12A.2 [Caenorhabditis elegans] ref|NP_498460.1| Y40D12A.2 [Caenorhabditis elegans] 0.0
blast CAE69163 Hypothetical protein CBG15195 [Caenorhabditis briggsae] 0.0
blast AAC26945 Hypothetical protein Y40D12A.1a [Caenorhabditis elegans] ref|NP_498461.2| Y40D12A.1a [Caenorhabditis elegans] 0.0
blast AAC26947 Serpentine receptor, class h protein 40 [Caenorhabditis elegans] ref|NP_498459.1| Serpentine Receptor, class H family member (srh-40) [Caenorhabditis elegans] 1.0E-152
Protein Domains
Database ID Description E-Value
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.8E-112
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Pfam IPR002877 EMBL-EBI Ribosomal RNA methyltransferase RrmJ/FtsJ 1.3E-55
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498460.1 1 489-511
Y40D12A.2 1 489-511
GENEFINDER00000007328 7 20-42,52-74,99-121,159-181,202-224,239-261,270-292
Sequence
Target Sequence 
>C. ELEGANS:191017_AT
tggagagtcccctgttttgaagaataaatatttctatccaccatcaaacgacattcaagg
acaacctgattgtgcctctcatgatgatcactttccttatttgaactccccagaagtcaa
aaaagctttgagaattccagattatgttccaaagtatgaaatgtgcaatatggaaatcgc
tgagaattatcaatcgcagtatccaaccatgaaaaagttctttgacactgtcattgatgc
gaaaaagcacgttgctatgttcaacggagacgcagacacgctttgcaactacgttgaaaa
ctctcaatttatttacaaaactctgaaaaaaacagtgaaaactgcaatgatgccatggaa
tgacccagttcaacttccaatggctgttgggcaagtcacagaatacgatggaattacatt
aatctcaatcaaaggaggtggacatttcccagctgcaactgaacagaaacctaaagagac
cttccaaatgttccagaattacgtgaagcatcaaaattatagtacccctgtagctttcga
taa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGAGTCCCCTGTTTTGAAGAAT 480 547 924 Antisense
TTCTATCCACCATCAAACGACATTC 407 685 955 Antisense
AAGGACAACCTGATTGTGCCTCTCA 263 161 980 Antisense
GTGCCTCTCATGATGATCACTTTCC 104 479 995 Antisense
TCACTTTCCTTATTTGAACTCCCCA 226 627 1011 Antisense
TATCAATCGCAGTATCCAACCATGA 696 657 1111 Antisense
GTTCAACGGAGACGCAGACACGCTT 536 445 1182 Antisense
GCAGACACGCTTTGCAACTACGTTG 517 313 1195 Antisense
GCCATGGAATGACCCAGTTCAACTT 362 281 1275 Antisense
GACATTTCCCAGCTGCAACTGAACA 232 371 1364 Antisense
ATAGTACCCCTGTAGCTTTCGATAA 262 21 1442 Antisense
Sequence Source Affymetrix Proprietary Database