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[191014_s_at] WD domain, G-beta repeats

Description T01C3.1 /REP_DB=WormBase Gene ID /WP=CE12908 /TR=Q22059 /GB=CAB01663.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeats
Cluster 6grp_high1_10_10 > 97      6grp_total > 97      4grp_total > 57      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 78.5
(-2.9)
P 		100.7
(-1.3)
P 		163.9
(3)
M 		76.4
(-3)
A 		88
B 135.1
(3)
P 		102.1
(-1)
P 		85
(-3)
P 		98.9
(-1.3)
A 		50
C 85.4
(-3)
P 		156.4
(3)
M 		125.5
(0.4)
P 		113.2
(-0.7)
A 		71
avr 99.7
(-2.3) 		119.7
(1.9) 		124.8
(3) 		96.2
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 99.8
(-2.4)
M 		108
(-2.2)
A 		78.4
(-3)
A 		89.3
(-2.7)
A 		232.3
(1.3)
P 		295.4
(3)
P 		217
B 95.1
(-2.6)
P 		114.2
(-2)
P 		79.6
(-3)
P 		156.4
(-0.8)
P 		225.6
(1.1)
P 		292.9
(3)
P 		213
C 75.6
(-3)
A 		77.6
(-3)
P 		96
(-2.6)
A 		149.4
(-1.4)
A 		224
(0.2)
P 		354.7
(3)
P 		279
avr 90.2
(-2.9) 		99.9
(-2.6) 		84.7
(-3) 		131.7
(-1.8) 		227.3
(0.7) 		314.3
(3) 		230
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 28.6
(0.3)
P 		21.9
(-1)
P 		42.8
(3)
M 		11.2
(-3)
A 		32
B 43.1
(3)
P 		25.2
(-1.6)
P 		19.7
(-3)
P 		21.1
(-2.6)
A 		23
C 28.3
(-0.9)
P 		45
(3)
M 		43.7
(2.7)
P 		19.1
(-3)
A 		26
avr 33.3
(2.3) 		30.7
(1.5) 		35.4
(3) 		17.1
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 18.4
(-2.9)
M 		38.4
(-0.7)
A 		17.1
(-3)
A 		22.6
(-2.4)
A 		70.1
(2.8)
P 		71.9
(3)
P 		55
B 33.1
(-2.1)
P 		38
(-1.8)
P 		19.3
(-3)
P 		41.4
(-1.5)
P 		91.7
(1.8)
P 		109.2
(3)
P 		90
C 28
(-2.7)
A 		23.7
(-3)
P 		24.4
(-3)
A 		30
(-2.6)
A 		72.5
(0.1)
P 		118.7
(3)
P 		95
avr 26.5
(-2.5) 		33.4
(-2) 		20.3
(-3) 		31.3
(-2.2) 		78.1
(1.4) 		99.9
(3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191014_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13608
Sequence Type Exemplar sequence
Representative Public ID T01C3.1 NCBI
Target Description T01C3.1 /REP_DB=WormBase Gene ID /WP=CE12908 /TR=Q22059 /GB=CAB01663.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074284 NCBI Caenorhabditis elegans T01C3.1 (T01C3.1) mRNA, complete cds. 11/11 None
SNAP00000022409 ENSEMBL cdna:SNAP chromosome:CEL140:V:14990333:14993498:-1 11/11 None
GENEFINDER00000022427 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14990333:14993107:-1 11/11 None
T01C3.1 ENSEMBL cdna:known chromosome:CEL140:V:14990218:14993610:-1 gene:T01C3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14990332-14993498(-) 99.63 100.0
Public Domain and Genome References
Gene Title WD domain, G-beta repeats
Ensembl T01C3.1
Entrez Gene 179995 Entrez gene
SwissProt Q22059 EMBL-EBI
WormBase CE12908 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01663 Hypothetical protein T01C3.1 [Caenorhabditis elegans] ref|NP_506685.1| T01C3.1 [Caenorhabditis elegans] 0.0
blast CAE66343 Hypothetical protein CBG11595 [Caenorhabditis briggsae] 0.0
blast AAH64851 Denticleless homolog [Xenopus tropicalis] ref|NP_989402.1| denticleless homolog [Xenopus tropicalis] 9.0E-35
blast AAH64851 Denticleless homolog [Xenopus tropicalis] ref|NP_989402.1| denticleless homolog [Xenopus tropicalis] 2.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.8E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0056
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0013
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0056
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0013
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.26
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.0E-13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0056
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0013
Sequence
Target Sequence 
>C. ELEGANS:191014_S_AT
atcaccacttcaaccaactaattcaaataaccaggatcttgtcggctaccgtactccccg
acaaatccgtaacaaaaagaagaagaataatccattttacaacgagcatccaactgaggg
tctgccaaactttgtctacgatacattcgtcaaaaaactcataggagaatcttcaaaatc
tgatattgaagattccggaaaatcgttgagcaagactggacagaagagaatcgaagactg
gtggcaaaccaagggagaaaatgtggcaacagtgacaagggcgagactcccaagtgtcag
tgaattcggtgaatcagcatgctcaaaagttataaccgaagacgaacggatcgctcttca
ctctccgcgtaaacttgttctcaaatcatcttcaacccaatctccgtgcccatcaaattc
aaagcctaagcccatcccaatgactccacgaaaaccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACCACTTCAACCAACTAATTCA 126 29 1689 Antisense
ATAACCAGGATCTTGTCGGCTACCG 245 25 1715 Antisense
TAATCCATTTTACAACGAGCATCCA 170 625 1776 Antisense
CGAGCATCCAACTGAGGGTCTGCCA 383 251 1791 Antisense
GGGTCTGCCAAACTTTGTCTACGAT 107 497 1806 Antisense
AAGGGCGAGACTCCCAAGTGTCAGT 77 159 1965 Antisense
GAAGACGAACGGATCGCTCTTCACT 408 339 2026 Antisense
CTCTCCGCGTAAACTTGTTCTCAAA 61 231 2049 Antisense
TGTTCTCAAATCATCTTCAACCCAA 546 561 2064 Antisense
TCTCCGTGCCCATCAAATTCAAAGC 393 611 2089 Antisense
ATCCCAATGACTCCACGAAAACCGA 27 21 2122 Antisense
Sequence Source Affymetrix Proprietary Database