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[191011_at] 7TM chemoreceptor, srh family

Description R52.7 /REP_DB=WormBase Gene ID /WP=CE21126 /GEN=srh-195 /TR=O17292 /GB=AAB71064.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 21      4grp_total > 04      6grp_cgc > 81      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 3.4
(-3)
A 		10.2
(-0.5)
A 		3.5
(-3)
A 		19.4
(3)
A 		16
B 23.8
(3)
A 		3.9
(-2.5)
A 		12.1
(-0.3)
A 		2.2
(-3)
A 		22
C 3.6
(-2.8)
A 		6
(-2.6)
A 		2.2
(-3)
A 		53
(3)
A 		51
avr 10.3
(-1.6) 		6.7
(-2.7) 		5.9
(-3) 		24.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 6.5
(0.9)
A 		4.3
(-3)
A 		7.7
(3)
A 		5.5
(-0.9)
A 		7.6
(2.8)
A 		5.9
(-0.2)
A 		3
B 7.3
(-0.9)
A 		15.6
(3)
A 		14.2
(2.3)
A 		4.4
(-2.3)
A 		2.9
(-3)
A 		4.4
(-2.3)
A 		13
C 7.7
(1.1)
A 		6
(-1)
A 		4.4
(-3)
A 		9.2
(3)
A 		8.3
(1.9)
A 		7.1
(0.4)
A 		5
avr 7.2
(-0.2) 		8.6
(2.6) 		8.8
(3) 		6.4
(-1.8) 		6.3
(-2) 		5.8
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.2
(-2.1)
A 		2.2
(1.1)
A 		0.9
(-3)
A 		2.8
(3)
A 		2
B 7.6
(3)
A 		1
(-2.6)
A 		2.8
(-1.1)
A 		0.5
(-3)
A 		7
C 1.2
(-2.7)
A 		1.7
(-2.3)
A 		0.8
(-3)
A 		8.9
(3)
A 		8
avr 3.3
(1.2) 		1.6
(-2.8) 		1.5
(-3) 		4.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.5
(-1.4)
A 		1.7
(-0.3)
A 		1.4
(-1.9)
A 		2.3
(3)
A 		1.4
(-1.9)
A 		1
B 2.5
(-1.1)
A 		5.2
(3)
A 		3.5
(0.5)
A 		1.2
(-3)
A 		1.2
(-3)
A 		1.7
(-2.3)
A 		4
C 2.9
(3)
A 		1.8
(-0.7)
A 		1.1
(-3)
A 		1.8
(-0.7)
A 		2.7
(2.3)
A 		2.4
(1.3)
A 		2
avr 2.2
(0.2) 		2.8
(3) 		2.1
(-0.2) 		1.5
(-3) 		2.1
(-0.2) 		1.8
(-1.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5627
Sequence Type Exemplar sequence
Representative Public ID R52.7 NCBI
Target Description R52.7 /REP_DB=WormBase Gene ID /WP=CE21126 /GEN=srh-195 /TR=O17292 /GB=AAB71064.2 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061785 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-195) (srh-195) mRNA, complete cds. 11/11 None
R52.7 ENSEMBL cdna:known chromosome:CEL140:II:2114632:2116895:-1 gene:R52.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034565 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2114630-2116894(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-195
Ensembl R52.7
Entrez Gene 187881 Entrez gene
SwissProt O17292 EMBL-EBI
WormBase CE21126 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB71064 Serpentine receptor, class h protein 195 [Caenorhabditis elegans] ref|NP_494186.1| Serpentine Receptor, class H family member (srh-195) [Caenorhabditis elegans] 0.0
blast E88066 protein R52.7 [imported] - Caenorhabditis elegans 0.0
blast AAG24117 Serpentine receptor, class h protein 193 [Caenorhabditis elegans] ref|NP_504183.2| Serpentine Receptor, class H family member (srh-193) [Caenorhabditis elegans] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494186.1 7 18-40,53-75,95-117,138-160,196-218,241-263,276-298
R52.7 7 18-40,53-75,95-117,138-160,196-218,241-263,276-298
Sequence
Target Sequence 
>C. ELEGANS:191011_AT
tggaggcgtgtatggcttgcagcccactatattcttcttattgtcctactaagtgttatc
ccatttttggtacccgatcagaatattgcagtgaaaaaactttttcagaacattccctgc
ctaccgaaacattttttggaggcgccgatttttgtggttgctgacgataagacttatcat
atgatagctgcggtattccatatcgcactgatatgtttcgaagtatttcttttcgtcgta
tttttgatcagaaacagcgcgaagcagctgaaggaaaagacaatgtcgcagaaaacattt
gaacttcaaaagcgatttttcatcgctctagttattcaaataagcattccattggcttgc
ttcatatttccactggcttttgctgcattttcagttatcattggttattccaatcaggca
gtcactaacgttctagttgtgacaattgcatctcatggtattgtgtcaacaattgcgatg
cttttgcttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGGCGTGTATGGCTTGCAGCCC 94 549 418 Antisense
CAGCCCACTATATTCTTCTTATTGT 408 203 437 Antisense
GTCCTACTAAGTGTTATCCCATTTT 599 475 460 Antisense
ATCCCATTTTTGGTACCCGATCAGA 552 37 475 Antisense
CTTTTTCAGAACATTCCCTGCCTAC 478 221 517 Antisense
GGCGCCGATTTTTGTGGTTGCTGAC 299 543 558 Antisense
AGCTGCGGTATTCCATATCGCACTG 273 81 603 Antisense
TTCCATTGGCTTGCTTCATATTTCC 280 699 764 Antisense
ATATTTCCACTGGCTTTTGCTGCAT 573 19 781 Antisense
TGGTTATTCCAATCAGGCAGTCACT 460 551 819 Antisense
AACAATTGCGATGCTTTTGCTTCAT 34 135 885 Antisense
Sequence Source Affymetrix Proprietary Database