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[191009_s_at]

Description Y45F10A.6 /REP_DB=WormBase Gene ID /WP=CE19171 /CHR=4 /FEA=Sanger Annotation /DEF=Probable rabGAP domains (HINXTON) TR:O62462 protein_id:CAA16368.1
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 84      6grp_total > 78      4grp_total > 22      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 445
1 2 3 4 range
A 646.7
(3)
P 		334.7
(-1.2)
P 		202
(-3)
P 		520.1
(1.3)
P 		445
B 446.6
(0.7)
P 		346.8
(-1.4)
P 		265.7
(-3)
P 		562.7
(3)
P 		297
C 638.7
(3)
P 		347.6
(-3)
P 		402
(-1.9)
P 		551.6
(1.2)
P 		291
avr 577.3
(3) 		343
(-1.9) 		289.9
(-3) 		544.8
(2.3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 428.3
(-3)
P 		456.7
(-2.2)
P 		575.6
(1.2)
P 		576.5
(1.2)
P 		487
(-1.3)
P 		640.6
(3)
P 		212
B 558.2
(-0.8)
P 		597
(-0.1)
P 		438.2
(-3)
P 		451.8
(-2.8)
P 		601.4
(-0.1)
P 		770.2
(3)
P 		332
C 526.9
(-2.3)
P 		550.2
(-1.9)
P 		492.7
(-3)
P 		503.4
(-2.8)
P 		650.5
(0.1)
P 		801
(3)
P 		308
avr 504.5
(-2.9) 		534.6
(-2.2) 		502.2
(-3) 		510.6
(-2.8) 		579.6
(-1) 		737.3
(3) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 235.5
(3)
P 		72.7
(-2.3)
P 		52.8
(-3)
P 		76.1
(-2.2)
P 		183
B 142.4
(3)
P 		85.6
(-1.2)
P 		61.6
(-3)
P 		119.9
(1.3)
P 		81
C 211.4
(3)
P 		99.9
(-2.7)
P 		140.1
(-0.6)
P 		93
(-3)
P 		118
avr 196.4
(3) 		86.1
(-2.9) 		84.8
(-3) 		96.3
(-2.4) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 79
(-3)
P 		162.4
(3)
P 		125.4
(0.3)
P 		146.2
(1.8)
P 		146.9
(1.9)
P 		156
(2.5)
P 		83
B 194.2
(-0.1)
P 		198.7
(0.1)
P 		106.4
(-3)
P 		119.7
(-2.6)
P 		244.3
(1.6)
P 		287.2
(3)
P 		181
C 195.3
(0.4)
P 		167.9
(-0.6)
P 		125.4
(-2.1)
P 		101.2
(-3)
P 		210.5
(0.9)
P 		268.1
(3)
P 		167
avr 156.2
(-1.1) 		176.3
(-0.1) 		119.1
(-3) 		122.4
(-2.8) 		200.6
(1.1) 		237.1
(3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191009_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9062
Sequence Type Exemplar sequence
Representative Public ID Y45F10A.6 NCBI
Target Description Y45F10A.6 /REP_DB=WormBase Gene ID /WP=CE19171 /CHR=4 /FEA=Sanger Annotation /DEF=Probable rabGAP domains (HINXTON) TR:O62462 protein_id:CAA16368.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070198(11), NM_070197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070198 NCBI Caenorhabditis elegans Y45F10A.6b (Y45F10A.6) mRNA, complete cds. 11/11 None
NM_070197 NCBI Caenorhabditis elegans Y45F10A.6a (Y45F10A.6) mRNA, complete cds. 11/11 None
SNAP00000011906 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13476245:13481971:-1 11/11 None
GENEFINDER00000011913 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13476500:13481971:-1 11/11 None
Y45F10A.6b ENSEMBL cdna:known chromosome:CEL140:IV:13476904:13501306:-1 gene:Y45F10A.6 11/11 None
Y45F10A.6a ENSEMBL cdna:known chromosome:CEL140:IV:13476933:13501306:-1 gene:Y45F10A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13477086-13501312(-) 99.4 100.0
Public Domain and Genome References
Ensembl Y45F10A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42378 Hypothetical protein Y45F10A.6b [Caenorhabditis elegans] emb|CAC42374.1| Hypothetical protein Y45F10A.6b [Caenorhabditis elegans] ref|NP_502599.1| Y45F10A.6b [Caenorhabditis elegans] 0.0
blast CAA16368 Hypothetical protein Y45F10A.6a [Caenorhabditis elegans] emb|CAA16349.1| Hypothetical protein Y45F10A.6a [Caenorhabditis elegans] ref|NP_502598.1| Y45F10A.6a [Caenorhabditis elegans] 0.0
blast CAE58594 Hypothetical protein CBG01761 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 4.5E-68
Pfam IPR004182 EMBL-EBI GRAM domain 4.6E-27
Pfam IPR004182 EMBL-EBI GRAM domain 7.2E-23
Sequence
Target Sequence 
>C. ELEGANS:191009_S_AT
ggatcgtgtccttcagaaactgatgtagatcgaattcaagttgctgatgtcgctagtgag
gaatcgtactctgtggtcgacgaatcgattgaaaaaatgaagcaactgagagcaaaagca
ctatcatcgcctgattctagttcaacaaaacttgaaatgaagatgcttccagtgatgagt
cagatacaattcatacaactttggaagacattctacgatatgctaagtggaaaagaaact
gaacaatcagtattccattctctagcagtcactggaactcttcttctacaactcggagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCGTGTCCTTCAGAAACTGATG 334 513 3196 Antisense
CAAGTTGCTGATGTCGCTAGTGAGG 679 183 3232 Antisense
GAGGAATCGTACTCTGTGGTCGACG 470 403 3253 Antisense
CGTACTCTGTGGTCGACGAATCGAT 307 245 3260 Antisense
GAGCAAAAGCACTATCATCGCCTGA 166 391 3305 Antisense
ATCATCGCCTGATTCTAGTTCAACA 543 29 3318 Antisense
GAAGATGCTTCCAGTGATGAGTCAG 640 337 3354 Antisense
GGAAGACATTCTACGATATGCTAAG 526 531 3398 Antisense
CAGTATTCCATTCTCTAGCAGTCAC 51 207 3443 Antisense
TCTCTAGCAGTCACTGGAACTCTTC 126 613 3454 Antisense
AACTCTTCTTCTACAACTCGGAGAA 162 141 3471 Antisense
Sequence Source Affymetrix Proprietary Database