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[191008_at] Band 7 family

Description Y71H9A.3 /REP_DB=WormBase Gene ID /WP=CE22957 /GEN=sto-4 /TR=Q9N644 /GB=CAB82215.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Band 7 family
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 20      6grp_total > 07      4grp_total > 45      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 747
1 2 3 4 range
A 1514.5
(3)
P 		968
(-2.2)
P 		912.6
(-2.7)
P 		881.4
(-3)
P 		633
B 1306.2
(3)
P 		1287.2
(2.8)
P 		767.5
(-3)
P 		883.6
(-1.7)
P 		539
C 1473
(3)
P 		1304.5
(1.2)
P 		907.9
(-3)
P 		908
(-3)
P 		565
avr 1431.2
(3) 		1186.6
(0.4) 		862.7
(-3) 		891
(-2.7) 		569

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 815
1 2 3 4 5 6 range
A 1557.8
(3)
P 		1166.6
(0.1)
P 		976.5
(-1.3)
P 		863.4
(-2.2)
P 		755.9
(-3)
P 		879.6
(-2.1)
P 		802
B 1519.8
(3)
P 		1093.1
(-0.6)
P 		898.8
(-2.2)
P 		836.9
(-2.7)
P 		800.2
(-3)
P 		824.1
(-2.8)
P 		720
C 1570.8
(3)
P 		1198.3
(0)
P 		1158.2
(-0.3)
P 		961.3
(-1.9)
P 		824
(-3)
P 		856.1
(-2.7)
P 		747
avr 1549.5
(3) 		1152.7
(-0.1) 		1011.2
(-1.3) 		887.2
(-2.3) 		793.4
(-3) 		853.3
(-2.5) 		756
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 422
1 2 3 4 range
A 551.4
(3)
P 		210.1
(-1.8)
P 		238.6
(-1.4)
P 		129
(-3)
P 		422
B 416.5
(3)
P 		317.9
(0.5)
P 		177.9
(-3)
P 		188.3
(-2.7)
P 		239
C 487.6
(3)
P 		375
(1)
P 		316.4
(-0.1)
P 		153.1
(-3)
P 		335
avr 485.2
(3) 		301
(-0.4) 		244.3
(-1.4) 		156.8
(-3) 		328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 287.2
(-0.8)
P 		414.9
(3)
P 		212.7
(-3)
P 		219
(-2.8)
P 		228.1
(-2.5)
P 		214.2
(-3)
P 		202
B 528.8
(3)
P 		363.8
(-0.2)
P 		218.3
(-3)
P 		221.7
(-2.9)
P 		325.1
(-0.9)
P 		307.3
(-1.3)
P 		311
C 582.2
(3)
P 		365.6
(-0.3)
P 		294.8
(-1.4)
P 		193.3
(-3)
P 		266.6
(-1.9)
P 		286.6
(-1.6)
P 		389
avr 466.1
(3) 		381.4
(1) 		241.9
(-2.3) 		211.3
(-3) 		273.3
(-1.5) 		269.4
(-1.6) 		255
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16159
Sequence Type Exemplar sequence
Representative Public ID Y71H9A.3 NCBI
Target Description Y71H9A.3 /REP_DB=WormBase Gene ID /WP=CE22957 /GEN=sto-4 /TR=Q9N644 /GB=CAB82215.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Band 7 family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077543 NCBI Caenorhabditis elegans STOmatin family member (sto-4) (sto-4) mRNA, complete cds. 11/11 None
GENEFINDER00000020409 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11645390:11646954:1 10/11 None
Y71H9A.3.1 ENSEMBL cdna:known chromosome:CEL140:X:11644064:11647201:1 gene:Y71H9A.3 11/11 None
Y71H9A.3.2 ENSEMBL cdna:known chromosome:CEL140:X:11644126:11647201:1 gene:Y71H9A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020396 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11644363-11646954(+) 100.0 100.0
Public Domain and Genome References
Gene Title Band 7 family
Gene Symbol sto-4
Ensembl Y71H9A.3
Entrez Gene 181350 Entrez gene
SwissProt Q22165 EMBL-EBI
WormBase CE22957 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1624679_AT dm
DROSGENOME1:151362_R_AT dm
DROSGENOME1:145351_AT dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB76415 Hypothetical protein Y71H9A.3 [Caenorhabditis elegans] emb|CAB82215.1| Hypothetical protein Y71H9A.3 [Caenorhabditis elegans] ref|NP_509944.1| STOmatin family member (sto-4) [Caenorhabditis elegans] sp|Q22165|STO4_CAEEL Stomatin protein 1.0E-138
blast CAE70604 Hypothetical protein CBG17279 [Caenorhabditis briggsae] 1.0E-137
blast CAE70605 Hypothetical protein CBG17281 [Caenorhabditis briggsae] 1.0E-103
blast CAE70604 Hypothetical protein CBG17279 [Caenorhabditis briggsae] 3.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR001107 EMBL-EBI Band 7 protein 3.8E-80
Pfam IPR001107 EMBL-EBI Band 7 protein 3.7E-48
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509944.1 1 21-43
Y71H9A.3.1 1 21-43
Y71H9A.3.2 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:191008_AT
tgttgtttcgtttgatgttccgccacaagagattttgtcaaaagattctgtcaccgtttc
tgtggatgctgttatttactttagaatatctaacgctacggtgtcggtgatcaatgttga
agatgcagctcgatcaacaaagcttcttgcccaaaccacattgagaaattttcttggaac
aagaacgctggctgaaatgctttcatctcgtgatgccatttctatgcaaatgcaagccgc
actggatgaagccactgatccgtggggagttaaagttgaacgagttgaaatcaaagacgt
ccggcttccaattcaacttcagcgggctatggcggctgaagcagaagcagcgcgagcagc
tggagcaaaaataatcgctgctgagggagaacaactcgcgtcgagagccttggcggatgc
agccgatgtgattgcaacgtctccatgtgcaattcaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGTTTCGTTTGATGTTCCGCCA 599 563 291 Antisense
GATTCTGTCACCGTTTCTGTGGATG 669 431 334 Antisense
CTAACGCTACGGTGTCGGTGATCAA 21 225 380 Antisense
GATCAACAAAGCTTCTTGCCCAAAC 597 421 422 Antisense
TCATCTCGTGATGCCATTTCTATGC 117 621 493 Antisense
ATGCAAGCCGCACTGGATGAAGCCA 4 45 520 Antisense
TGAAATCAAAGACGTCCGGCTTCCA 196 571 576 Antisense
CCGGCTTCCAATTCAACTTCAGCGG 701 265 591 Antisense
AACAACTCGCGTCGAGAGCCTTGGC 598 133 680 Antisense
CAGCCGATGTGATTGCAACGTCTCC 469 203 710 Antisense
AACGTCTCCATGTGCAATTCAACTT 596 143 726 Antisense
Sequence Source Affymetrix Proprietary Database