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[191003_at] nuclear hormone receptor

Description C17E7.7 /REP_DB=WormBase Gene ID /WP=CE17412 /TR=O16390 /GB=AAC24281.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster 6grp_total > 93      4grp_total > 22      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 43.7
(1.5)
A 		44.4
(1.6)
A 		11.9
(-3)
A 		54.4
(3)
A 		43
B 38.9
(3)
A 		21.7
(-2)
A 		18.3
(-3)
A 		33.3
(1.4)
A 		21
C 65
(3)
A 		19.7
(-3)
A 		23.6
(-2.5)
A 		63
(2.7)
A 		45
avr 49.2
(2.8) 		28.6
(-1) 		17.9
(-3) 		50.2
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 7
(-3)
A 		9.6
(-2.6)
A 		18.2
(-1.3)
A 		9.9
(-2.6)
A 		47.5
(3)
A 		14.3
(-1.9)
A 		41
B 39.1
(3)
A 		14.3
(-1.3)
A 		4.1
(-3)
A 		8.4
(-2.3)
A 		30.7
(1.6)
A 		8.2
(-2.3)
A 		35
C 5.2
(-2.9)
A 		30.4
(3)
A 		20.7
(0.7)
A 		7.6
(-2.4)
A 		4.9
(-3)
A 		12
(-1.3)
A 		26
avr 17.1
(-0.3) 		18.1
(-0) 		14.3
(-1.2) 		8.6
(-3) 		27.7
(3) 		11.5
(-2.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 15.9
(3)
A 		9.6
(0)
A 		3.1
(-3)
A 		8
(-0.7)
A 		13
B 12.4
(3)
A 		5.4
(-2.2)
A 		4.3
(-3)
A 		7.1
(-0.9)
A 		8
C 21.5
(3)
A 		5.7
(-3)
A 		8.2
(-2.1)
A 		10.6
(-1.1)
A 		16
avr 16.6
(3) 		6.9
(-2.1) 		5.2
(-3) 		8.6
(-1.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.3
(-3)
A 		3.4
(-2)
A 		4
(-1.8)
A 		2.5
(-2.4)
A 		14.3
(3)
A 		3.5
(-2)
A 		13
B 13.6
(3)
A 		4.8
(-1.2)
A 		1
(-3)
A 		2.2
(-2.4)
A 		12.5
(2.5)
A 		3.1
(-2)
A 		13
C 1.9
(-2.7)
A 		9.3
(3)
A 		5.3
(-0.1)
A 		1.5
(-3)
A 		1.6
(-2.9)
A 		4
(-1.1)
A 		8
avr 5.6
(-0.2) 		5.8
(-0) 		3.4
(-1.9) 		2.1
(-3) 		9.5
(3) 		3.5
(-1.9) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191003_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15731
Sequence Type Exemplar sequence
Representative Public ID C17E7.7 NCBI
Target Description C17E7.7 /REP_DB=WormBase Gene ID /WP=CE17412 /TR=O16390 /GB=AAC24281.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071668 NCBI Caenorhabditis elegans C17E7.7 (C17E7.7) mRNA, complete cds. 11/11 None
SNAP00000014083 ENSEMBL cdna:SNAP chromosome:CEL140:V:3875134:3877298:-1 11/11 None
GENEFINDER00000014099 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3875134:3876771:-1 11/11 None
C17E7.7 ENSEMBL cdna:known chromosome:CEL140:V:3875134:3877171:-1 gene:C17E7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3875133-3877171(-) 100.0 100.0
Public Domain and Genome References
Gene Title nuclear hormone receptor
Gene Symbol nhr-159
Ensembl C17E7.7
Entrez Gene 182732 Entrez gene
SwissProt O16390 EMBL-EBI
WormBase CE17412 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24281 Hypothetical protein C17E7.7 [Caenorhabditis elegans] ref|NP_504069.1| C17E7.7 [Caenorhabditis elegans] 0.0
blast AAC24281 Hypothetical protein C17E7.7 [Caenorhabditis elegans] ref|NP_504069.1| C17E7.7 [Caenorhabditis elegans] 1.0E-176
blast CAE62411 Hypothetical protein CBG06500 [Caenorhabditis briggsae] 2.0E-97
blast CAE62411 Hypothetical protein CBG06500 [Caenorhabditis briggsae] 3.0E-97
blast AAC24272 Hypothetical protein C17E7.6 [Caenorhabditis elegans] ref|NP_504068.1| C17E7.6 [Caenorhabditis elegans] 2.0E-83
blast AAC24272 Hypothetical protein C17E7.6 [Caenorhabditis elegans] ref|NP_504068.1| C17E7.6 [Caenorhabditis elegans] 6.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 5.0E-52
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.7E-7
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 5.0E-52
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.7E-7
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 5.0E-52
Sequence
Target Sequence 
>C. ELEGANS:191003_AT
aactccgtcctcaagattggtcattttttgcactttacacaacggtagaatttttatcca
acatgccattcatgagcaaacttcaaactgcagaaaaaatgtgcttactgcgaaattccg
cctcaaaatgctcacttttcgcaggcgctatgagaagtttcaatgagaaaaaggctgaaa
tgataacggtggatggccaggatatttatccaaatagtatactagattttgtgggctctt
ctggtggagccagagagtttctgggcaggattaaaagcatggtggtcggaaaacttgcag
agctgacggttcttcgagaagagtttttgctgatttcttcaattattttttgcaatccag
atgtgttctacgagccggagaactcagcagcccaatcaaaagtagcgtcccaacaacaag
agttcacggcagctttgcttcacttctgcatgtgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCCGTCCTCAAGATTGGTCATT 50 143 590 Antisense
ATTGGTCATTTTTTGCACTTTACAC 279 3 605 Antisense
GTAGAATTTTTATCCAACATGCCAT 209 455 634 Antisense
GTGCTTACTGCGAAATTCCGCCTCA 477 479 690 Antisense
GCCTCAAAATGCTCACTTTTCGCAG 237 283 709 Antisense
ACTAGATTTTGTGGGCTCTTCTGGT 592 101 810 Antisense
CTTGCAGAGCTGACGGTTCTTCGAG 155 219 883 Antisense
AATCCAGATGTGTTCTACGAGCCGG 388 167 943 Antisense
GGAGAACTCAGCAGCCCAATCAAAA 592 517 966 Antisense
ACAAGAGTTCACGGCAGCTTTGCTT 267 113 1005 Antisense
CTTTGCTTCACTTCTGCATGTGCAA 482 223 1022 Antisense
Sequence Source Affymetrix Proprietary Database