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[191002_at] 7TM chemoreceptor, sre family

Description T05A7.7 /REP_DB=WormBase Gene ID /WP=CE04893 /TR=Q22208 /GB=AAA81120.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=glycoprotein H precursor
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 25      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 80      6grp_total > 25      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 24      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 300.8
(3)
P 		257.7
(1.1)
P 		168
(-3)
P 		218.1
(-0.7)
P 		133
B 395.6
(3)
P 		155.1
(-2.6)
P 		138
(-3)
P 		325
(1.4)
P 		258
C 307.1
(3)
P 		131.5
(-3)
P 		136
(-2.8)
P 		264.1
(1.5)
P 		176
avr 334.5
(3) 		181.4
(-1.9) 		147.3
(-3) 		269.1
(0.9) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 324.3
(2.9)
P 		328.2
(3)
P 		201
(-1)
P 		198.1
(-1.1)
P 		138.5
(-3)
P 		231.6
(-0.1)
P 		190
B 340.6
(3)
P 		311
(1.9)
P 		204.7
(-2.1)
P 		240.3
(-0.8)
P 		189.7
(-2.7)
P 		181.2
(-3)
P 		159
C 304.5
(3)
P 		299.8
(2.8)
P 		272.3
(1.8)
P 		234.9
(0.4)
P 		141.4
(-3)
P 		196.9
(-1)
P 		163
avr 323.1
(3) 		313
(2.6) 		226
(-0.5) 		224.4
(-0.6) 		156.5
(-3) 		203.2
(-1.3) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 109.5
(3)
P 		55.9
(-1.1)
P 		43.9
(-2.1)
P 		31.9
(-3)
P 		78
B 126.2
(3)
P 		38.3
(-2.6)
P 		32
(-3)
P 		69.3
(-0.6)
P 		94
C 101.7
(3)
P 		37.8
(-3)
P 		47.4
(-2.1)
P 		44.5
(-2.4)
P 		64
avr 112.5
(3) 		44
(-2.8) 		41.1
(-3) 		48.6
(-2.4) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 59.8
(-1.6)
P 		116.7
(3)
P 		43.8
(-2.8)
P 		50.2
(-2.3)
P 		41.8
(-3)
P 		56.4
(-1.8)
P 		75
B 118.5
(3)
P 		103.5
(1.7)
P 		49.7
(-3)
P 		63.6
(-1.8)
P 		77.1
(-0.6)
P 		67.6
(-1.4)
P 		69
C 112.9
(3)
P 		91.5
(1.1)
P 		69.3
(-0.9)
P 		47.2
(-2.9)
P 		45.8
(-3)
P 		65.9
(-1.2)
P 		67
avr 97.1
(2.2) 		103.9
(3) 		54.3
(-2.9) 		53.7
(-3) 		54.9
(-2.9) 		63.3
(-1.9) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4353
Sequence Type Exemplar sequence
Representative Public ID T05A7.7 NCBI
Target Description T05A7.7 /REP_DB=WormBase Gene ID /WP=CE04893 /TR=Q22208 /GB=AAA81120.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=glycoprotein H precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062428(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062428 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-39) (sre-39) mRNA, complete cds. 11/11 None
SNAP00000043920 ENSEMBL cdna:SNAP chromosome:CEL140:II:4679737:4680953:-1 10/11 None
GENEFINDER00000043930 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4679737:4683047:-1 11/11 None
T05A7.7 ENSEMBL cdna:known chromosome:CEL140:II:4679737:4681309:-1 gene:T05A7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4679735-4681308(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Ensembl T05A7.7
Entrez Gene 188085 Entrez gene
SwissProt Q22208 EMBL-EBI
WormBase CE04893 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494830 Serpentine Receptor, class E (epsilon) family member (sre-40) [Caenorhabditis elegans] gb|AAA81121.3| Serpentine receptor, class e (epsilon) protein 40 [Caenorhabditis elegans] 1.0E-141
blast NP_494829 Serpentine Receptor, class E (epsilon) family member (sre-39) [Caenorhabditis elegans] gb|AAA81120.1| Serpentine receptor, class e (epsilon) protein 39 [Caenorhabditis elegans] 3.0E-93
blast NP_494829 Serpentine Receptor, class E (epsilon) family member (sre-39) [Caenorhabditis elegans] gb|AAA81120.1| Serpentine receptor, class e (epsilon) protein 39 [Caenorhabditis elegans] 2.0E-82
blast NP_494829 Serpentine Receptor, class E (epsilon) family member (sre-39) [Caenorhabditis elegans] gb|AAA81120.1| Serpentine receptor, class e (epsilon) protein 39 [Caenorhabditis elegans] 2.0E-61
blast CAE67826 Hypothetical protein CBG13409 [Caenorhabditis briggsae] 7.0E-55
blast CAE67831 Hypothetical protein CBG13414 [Caenorhabditis briggsae] 3.0E-41
blast CAE67831 Hypothetical protein CBG13414 [Caenorhabditis briggsae] 6.0E-41
blast CAE67833 Hypothetical protein CBG13417 [Caenorhabditis briggsae] 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.0E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000043920 1 15-37
GENEFINDER00000043930 6 15-37,58-80,85-107,142-164,174-196,303-325
Sequence
Target Sequence 
>C. ELEGANS:191002_AT
aactgtctctcaagtggaaccacgtcgatgatgggatctcgagctctgggctacggtggt
cctgcaggaatgggaatgatgggtggaggtcttggagctttgacatcggcagcagctctt
tatggtggtggagcagggcttggtgggatgggaggatatggtggaggatttggagctgct
agtagaggtatctccgtaggcggaaacgttgcaactggagtcaccccatatggagcaaac
gctgcaaatgctccattagctgctggtcctattccgtcaactgttggcggaatgcaacct
tgctcgctcgttcaacaatgcttcaacggtcaaatctgcgtaaacgggtactgcagcaag
agtaatgtcgcttttcaaggaagtcaagtaatgccatcggaaaccacttgtatgaccggt
gccacgtgtccagtgggtcaatattgtatcggtggaatttgtgtgcaaaatccgatgtct
acaacatttgcttgccacaacctaatatcttgtccaatgggaatgatctgtcaatttgga
aggtgcctgccaaatggaatgccacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTGTCTCTCAAGTGGAACCACGT 341 143 181 Antisense
GTCTTGGAGCTTTGACATCGGCAGC 292 467 269 Antisense
CGGCAGCAGCTCTTTATGGTGGTGG 678 241 287 Antisense
GCAACTGGAGTCACCCCATATGGAG 502 317 391 Antisense
CAAATGCTCCATTAGCTGCTGGTCC 255 193 425 Antisense
GTCCTATTCCGTCAACTGTTGGCGG 218 457 446 Antisense
CTCGCTCGTTCAACAATGCTTCAAC 242 233 483 Antisense
GAAACCACTTGTATGACCGGTGCCA 248 357 580 Antisense
GTGCCACGTGTCCAGTGGGTCAATA 57 479 599 Antisense
TACAACATTTGCTTGCCACAACCTA 77 643 660 Antisense
GTGCCTGCCAAATGGAATGCCACCA 705 475 723 Antisense
Sequence Source Affymetrix Proprietary Database