[Home] | [Total List]

[191001_s_at] calcium-binding protein

Description H10E21.4 /REP_DB=WormBase Gene ID /WP=CE19489 /TR=O76670 /GB=AAC26922.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=calcium-binding protein
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 45      6grp_total > 82      4grp_total > 57      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5612
1 2 3 4 range
A 15.6
(-3)
A 		4946.6
(2.3)
P 		5581.2
(3)
P 		116
(-2.9)
A 		5566
B 29.3
(-3)
A 		4179.5
(1.4)
P 		5627.4
(3)
P 		49.1
(-3)
A 		5598
C 66.3
(-3)
A 		3874.9
(1.7)
P 		4935.2
(3)
P 		136.4
(-2.9)
A 		4869
avr 37.1
(-3) 		4333.7
(1.8) 		5381.3
(3) 		100.5
(-2.9) 		5344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3764
1 2 3 4 5 6 range
A 369.7
(-3)
P 		3005.5
(1.5)
P 		2562.5
(0.7)
P 		3899.9
(3)
P 		2825
(1.2)
P 		1150.6
(-1.7)
P 		3530
B 313.9
(-3)
P 		3151.2
(1.5)
P 		2558.1
(0.6)
P 		2863.5
(1.1)
P 		4078.3
(3)
P 		1322.6
(-1.4)
P 		3764
C 323.5
(-3)
P 		3107.2
(2.5)
P 		2324.3
(1)
P 		3361.7
(3)
P 		3017.1
(2.3)
P 		1286.6
(-1.1)
P 		3038
avr 335.7
(-3) 		3088
(2.4) 		2481.6
(1.2) 		3375
(3) 		3306.8
(2.9) 		1253.3
(-1.2) 		3039
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1714
1 2 3 4 range
A 5.7
(-3)
A 		1073.8
(1.4)
P 		1459
(3)
P 		17
(-3)
A 		1453
B 9.4
(-3)
A 		1032.2
(1.7)
P 		1304
(3)
P 		10.5
(-3)
A 		1295
C 22
(-3)
A 		1114.1
(0.9)
P 		1720.1
(3)
P 		23
(-3)
A 		1698
avr 12.4
(-3) 		1073.4
(1.3) 		1494.4
(3) 		16.8
(-3) 		1482

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1589
1 2 3 4 5 6 range
A 68.2
(-3)
P 		1068.9
(3)
P 		558.1
(-0.1)
P 		989.1
(2.5)
P 		852.5
(1.7)
P 		280.1
(-1.7)
P 		1001
B 109.2
(-3)
P 		1048.9
(0.6)
P 		621.2
(-1)
P 		758.4
(-0.5)
P 		1657
(3)
P 		493.2
(-1.5)
P 		1548
C 119.9
(-3)
P 		948.1
(2.8)
P 		591.6
(0.3)
P 		676
(0.9)
P 		976.3
(3)
P 		430.7
(-0.8)
P 		856
avr 99.1
(-3) 		1022
(2.2) 		590.3
(-0.2) 		807.8
(1) 		1161.9
(3) 		401.3
(-1.3) 		1063
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191001_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8262
Sequence Type Exemplar sequence
Representative Public ID H10E21.4 NCBI
Target Description H10E21.4 /REP_DB=WormBase Gene ID /WP=CE19489 /TR=O76670 /GB=AAC26922.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=calcium-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064727(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064727 NCBI Caenorhabditis elegans H10E21.4 (H10E21.4) mRNA, complete cds. 11/11 A 
SNAP00000020263 ENSEMBL cdna:SNAP chromosome:CEL140:III:15499:19563:-1 11/11 None
GENEFINDER00000020266 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:17421:19563:-1 11/11 None
H10E21.4 ENSEMBL cdna:known chromosome:CEL140:III:17383:19601:-1 gene:H10E21.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:17420-19563(-) 100.0 100.0
Public Domain and Genome References
Gene Title calcium-binding protein
Ensembl H10E21.4
Entrez Gene 175168 Entrez gene
SwissProt O76670 EMBL-EBI
WormBase CE19489 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC26922 Hypothetical protein H10E21.4 [Caenorhabditis elegans] ref|NP_497128.1| H10E21.4 [Caenorhabditis elegans] 1.0E-130
blast AAC26922 Hypothetical protein H10E21.4 [Caenorhabditis elegans] ref|NP_497128.1| H10E21.4 [Caenorhabditis elegans] 1.0E-129
blast CAE69167 Hypothetical protein CBG15199 [Caenorhabditis briggsae] 1.0E-111
blast CAE69167 Hypothetical protein CBG15199 [Caenorhabditis briggsae] 1.0E-110
blast ABA94450 calmodulin [Oryza sativa (japonica cultivar-group)] 8.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 7.5E-5
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 7.0E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.71
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 7.6E-5
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.2
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 3.4E-7
Sequence
Target Sequence 
>C. ELEGANS:191001_S_AT
ttatcgacggaatcctctcaatcgccgacactaacagagatggtcagctcacttatgccg
agttcaaaaaccacctgagcagcggagccaagagcctgagcccagccgaggagcaaagaa
accaggctctccagctcctcagctttattgacgccaacggtgataacaagttggaccagt
tggagctttacactttctcacagaaaacttccactaataaggtcaccaaatccgatgtcc
agcaaattttcgcaatgctcgacaagaaccaggacggttatttgaccgaaaacgagttgc
tccaacttgcacagcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCGACGGAATCCTCTCAATCGC 672 679 362 Antisense
CCTCTCAATCGCCGACACTAACAGA 92 269 375 Antisense
ATGGTCAGCTCACTTATGCCGAGTT 390 51 401 Antisense
GCCGAGTTCAAAAACCACCTGAGCA 283 283 418 Antisense
ACCTGAGCAGCGGAGCCAAGAGCCT 334 87 434 Antisense
CTGAGCCCAGCCGAGGAGCAAAGAA 487 237 457 Antisense
AGCAAAGAAACCAGGCTCTCCAGCT 327 71 473 Antisense
CCTCAGCTTTATTGACGCCAACGGT 98 269 498 Antisense
GTTGGAGCTTTACACTTTCTCACAG 32 437 540 Antisense
ATAAGGTCACCAAATCCGATGTCCA 571 25 578 Antisense
AGTTGCTCCAACTTGCACAGCAATT 372 65 656 Antisense
Sequence Source Affymetrix Proprietary Database