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[190999_at] Carnitate acyltransferase

Description T20B3.1 /REP_DB=WormBase Gene ID /WP=CE20086 /TR=Q9XUN8 /GB=CAB04738.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Carnitate acyltransferase
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 75      6grp_total > 48      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1477
1 2 3 4 range
A 1311.7
(0.8)
P 		426.4
(-3)
P 		771
(-1.5)
P 		1834.5
(3)
P 		1408
B 1370.1
(0.6)
P 		579.4
(-3)
P 		710.2
(-2.4)
P 		1903.8
(3)
P 		1324
C 1195.7
(0.2)
P 		615.1
(-3)
P 		727.2
(-2.4)
P 		1699.1
(3)
P 		1084
avr 1292.5
(0.5) 		540.3
(-3) 		736.1
(-2.1) 		1812.5
(3) 		1272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 722
1 2 3 4 5 6 range
A 1158.8
(2.5)
P 		629.5
(-2.6)
P 		591
(-3)
P 		784.8
(-1.1)
P 		745.9
(-1.5)
P 		1214.7
(3)
P 		624
B 1243.7
(3)
P 		521.8
(-3)
P 		542
(-2.8)
P 		823
(-0.5)
P 		816
(-0.6)
P 		961.2
(0.7)
P 		722
C 1171.2
(3)
P 		601.1
(-3)
P 		844.1
(-0.4)
P 		831.1
(-0.6)
P 		823.9
(-0.7)
P 		956.7
(0.7)
P 		570
avr 1191.2
(3) 		584.1
(-3) 		659
(-2.3) 		813
(-0.7) 		795.3
(-0.9) 		1044.2
(1.5) 		607
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 477.6
(3)
P 		92.6
(-3)
P 		201.6
(-1.3)
P 		268.5
(-0.3)
P 		385
B 436.9
(3)
P 		143.1
(-3)
P 		164.6
(-2.6)
P 		405.7
(2.4)
P 		294
C 395.8
(3)
P 		176.8
(-3)
P 		253.5
(-0.9)
P 		286.5
(0)
P 		219
avr 436.8
(3) 		137.5
(-3) 		206.6
(-1.6) 		320.2
(0.7) 		299

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 213.6
(0)
P 		223.9
(0.4)
P 		128.7
(-3)
P 		199
(-0.5)
P 		225.1
(0.5)
P 		295.8
(3)
P 		167
B 432.7
(3)
P 		173.7
(-2.2)
P 		131.6
(-3)
P 		218
(-1.3)
P 		331.5
(1)
P 		358.4
(1.5)
P 		301
C 434.1
(3)
P 		183.4
(-2.6)
P 		214.8
(-1.9)
P 		167.1
(-3)
P 		266.6
(-0.8)
P 		320.2
(0.4)
P 		267
avr 360.1
(3) 		193.7
(-1.9) 		158.4
(-3) 		194.7
(-1.9) 		274.4
(0.5) 		324.8
(1.9) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190999_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12680
Sequence Type Exemplar sequence
Representative Public ID T20B3.1 NCBI
Target Description T20B3.1 /REP_DB=WormBase Gene ID /WP=CE20086 /TR=Q9XUN8 /GB=CAB04738.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Carnitate acyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074844 NCBI Caenorhabditis elegans T20B3.1 (T20B3.1) mRNA, complete cds. 11/11 None
SNAP00000028344 ENSEMBL cdna:SNAP chromosome:CEL140:V:16817815:16823153:1 11/11 None
GENEFINDER00000028363 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16818158:16823153:1 11/11 None
T20B3.1 ENSEMBL cdna:known chromosome:CEL140:V:16818146:16823200:1 gene:T20B3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16818157-16823153(+) 100.0 100.0
Public Domain and Genome References
Gene Title Carnitate acyltransferase
Ensembl T20B3.1
Entrez Gene 180126 Entrez gene
SwissProt Q9XUN8 EMBL-EBI
WormBase CE20086 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1598435_AT similar to carnitine O-octanoyltransferase cfa
CANINE_2:CFA.18966.1.S1_S_AT similar to carnitine O-octanoyltransferase cfa
CANINE_2:CFA.20870.1.S1_AT similar to carnitine O-octanoyltransferase cfa
CANINE_2:CFA.20870.1.S1_S_AT similar to carnitine O-octanoyltransferase cfa
CANINE_2:CFAAFFX.3649.1.S1_AT similar to carnitine O-octanoyltransferase cfa
DROSOPHILA_2:1625652_S_AT dm
DROSGENOME1:141776_AT dm
HU35KSUBA:RC_AA056247_AT carnitine O-octanoyltransferase hs
HG-U133A:204573_AT carnitine O-octanoyltransferase hs
HG-U133_PLUS_2:204573_AT carnitine O-octanoyltransferase hs
HG-FOCUS:204573_AT carnitine O-octanoyltransferase hs
HG-U133A_2:204573_AT carnitine O-octanoyltransferase hs
U133_X3P:G10863952_3P_AT carnitine O-octanoyltransferase hs
U133_X3P:HS.130909.0.A1_3P_AT carnitine O-octanoyltransferase hs
HG-U133_PLUS_2:231102_AT carnitine O-octanoyltransferase hs
HG-U133B:231102_AT carnitine O-octanoyltransferase hs
HG-U95AV2:41693_R_AT carnitine O-octanoyltransferase hs
HG-U95E:74616_AT carnitine O-octanoyltransferase hs
HG-U133_PLUS_2:243283_AT Carnitine O-octanoyltransferase hs
HG-U133B:243283_AT Carnitine O-octanoyltransferase hs
HG-U95B:42538_AT Carnitine O-octanoyltransferase hs
HG-U95C:54589_AT Carnitine O-octanoyltransferase hs
HU35KSUBB:RC_W84716_AT Carnitine O-octanoyltransferase hs
U133_X3P:HS.150757.0.A1_3P_AT Carnitine O-octanoyltransferase hs
MG-U74BV2:105978_AT carnitine O-octanoyltransferase mm
MOE430A:1450966_AT carnitine O-octanoyltransferase mm
MOUSE430A_2:1450966_AT carnitine O-octanoyltransferase mm
MOUSE430_2:1450966_AT carnitine O-octanoyltransferase mm
RT-U34:J02844_S_AT carnitine O-octanoyltransferase rn
RG-U34A:J02844_S_AT carnitine O-octanoyltransferase rn
RG-U34A:U26033_AT carnitine O-octanoyltransferase rn
RAE230A:1387183_AT carnitine O-octanoyltransferase rn
RAT230_2:1387183_AT carnitine O-octanoyltransferase rn
RAE230A:1368426_AT carnitine O-octanoyltransferase rn
RAT230_2:1368426_AT carnitine O-octanoyltransferase rn
RAE230B:1380015_AT Carnitine O-octanoyltransferase rn
RAT230_2:1380015_AT Carnitine O-octanoyltransferase rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8415 acyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04738 Hypothetical protein T20B3.1 [Caenorhabditis elegans] ref|NP_507245.1| T20B3.1 [Caenorhabditis elegans] 0.0
blast CAE56253 Hypothetical protein CBG23894 [Caenorhabditis briggsae] 0.0
blast CAE70558 Hypothetical protein CBG17205 [Caenorhabditis briggsae] 4.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.2E-57
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 2.4E-54
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.2E-57
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 2.4E-54
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 1.2E-43
Pfam IPR000542 EMBL-EBI Acyltransferase ChoActase/COT/CPT 4.4E-53
Sequence
Target Sequence 
>C. ELEGANS:190999_AT
tagttcagttggctcttcagttggcgtttttgaagactcacggaagctttgctccgatct
acgagaccgcatcaacccgtaaattcttccacggcagaactgaaaccgtgcgtgggtgta
cgtcgcagtttgtcagatttgcgaaggcgctcctgggagatcaaacgaacgagaaagagg
atctcaagaagctcttcgactcagccatcaatgctcataaccagctcatggccgactgta
tggatggaagaggttttgaccgacatctcatgggtttgaagttaacactgtccatcatga
acaaaggatgtggcccaaagcgtcaagcacccgaatttttgcgagatgacacgtggaaga
ggacggggggagacgggaatttcctgctttccacgagcttcatcggctacatggacggga
atcaaccgggaactttcggctacgtggctgcaatgcgacctgacggctacggttgcttct
atagaatcggcaaatctagaatctccgttgccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTTCAGTTGGCTCTTCAGTTGGC 449 653 1220 Antisense
GACTCACGGAAGCTTTGCTCCGATC 62 373 1254 Antisense
CGCATCAACCCGTAAATTCTTCCAC 274 255 1287 Antisense
GAAACCGTGCGTGGGTGTACGTCGC 148 357 1321 Antisense
TCTTCGACTCAGCCATCAATGCTCA 572 617 1412 Antisense
ATAACCAGCTCATGGCCGACTGTAT 530 25 1436 Antisense
GGAGACGGGAATTTCCTGCTTTCCA 394 517 1588 Antisense
CCACGAGCTTCATCGGCTACATGGA 533 273 1610 Antisense
TTCGGCTACGTGGCTGCAATGCGAC 278 695 1654 Antisense
TGACGGCTACGGTTGCTTCTATAGA 45 571 1680 Antisense
CAAATCTAGAATCTCCGTTGCCGTC 562 191 1710 Antisense
Sequence Source Affymetrix Proprietary Database