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[190998_at] phosphate cotransporter

Description T28H11.8 /REP_DB=WormBase Gene ID /WP=CE14382 /TR=Q23063 /GB=AAB04605.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=phosphate cotransporter
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 06      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 60      6grp_total > 24      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 473
1 2 3 4 range
A 785.9
(3)
P 		470
(-1.2)
P 		331.8
(-3)
P 		499.6
(-0.8)
P 		454
B 804.6
(3)
P 		429.2
(-1.9)
P 		341.5
(-3)
P 		422.6
(-1.9)
P 		463
C 729.2
(3)
P 		488.4
(-0.8)
P 		353.5
(-3)
P 		435.7
(-1.7)
P 		376
avr 773.2
(3) 		462.5
(-1.3) 		342.3
(-3) 		452.6
(-1.5) 		431

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 514
1 2 3 4 5 6 range
A 677
(3)
P 		395.7
(-0.3)
P 		372.4
(-0.6)
P 		242.1
(-2.1)
P 		203
(-2.5)
P 		162.6
(-3)
P 		514
B 540.7
(3)
P 		419.8
(0.9)
P 		318
(-0.9)
P 		334.1
(-0.6)
P 		197.3
(-3)
P 		197
(-3)
P 		344
C 420.1
(2.4)
P 		448.7
(3)
P 		358.9
(1)
P 		318.9
(0.1)
P 		179.2
(-3)
P 		177.5
(-3)
P 		271
avr 545.9
(3) 		421.4
(1) 		349.8
(-0.2) 		298.4
(-1) 		193.2
(-2.8) 		179
(-3) 		367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 286.2
(3)
P 		102
(-2.2)
P 		86.8
(-2.6)
P 		73.1
(-3)
P 		213
B 256.6
(3)
P 		106
(-2.1)
P 		79.1
(-3)
P 		90
(-2.6)
P 		178
C 241.4
(3)
P 		140.4
(-0.6)
P 		123.2
(-1.2)
P 		73.5
(-3)
P 		168
avr 261.4
(3) 		116.1
(-1.8) 		96.4
(-2.4) 		78.9
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 124.8
(2.1)
P 		140.7
(3)
P 		81.1
(-0.5)
P 		61.4
(-1.7)
P 		61.3
(-1.7)
P 		39.6
(-3)
P 		101
B 188.1
(3)
P 		139.7
(0.5)
P 		77.2
(-2.8)
P 		88.5
(-2.2)
P 		80.1
(-2.7)
P 		73.5
(-3)
P 		115
C 155.7
(3)
P 		136.9
(1.8)
P 		91.3
(-1)
P 		64.1
(-2.6)
P 		58
(-3)
P 		59.4
(-2.9)
P 		98
avr 156.2
(3) 		139.1
(2) 		83.2
(-1.4) 		71.3
(-2.2) 		66.5
(-2.5) 		57.5
(-3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10627
Sequence Type Exemplar sequence
Representative Public ID T28H11.8 NCBI
Target Description T28H11.8 /REP_DB=WormBase Gene ID /WP=CE14382 /TR=Q23063 /GB=AAB04605.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=phosphate cotransporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068304 NCBI Caenorhabditis elegans T28H11.8 (T28H11.8) mRNA, complete cds. 11/11 None
T28H11.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:5017989:5020641:-1 gene:T28H11.8 11/11 None
T28H11.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:5018039:5020623:-1 gene:T28H11.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007224 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007238 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5018044-5020601(-) 100.0 100.0
Public Domain and Genome References
Gene Title phosphate cotransporter
Ensembl T28H11.8
Entrez Gene 189063 Entrez gene
SwissProt Q23063 EMBL-EBI
WormBase CE31728 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04605 Hypothetical protein T28H11.8 [Caenorhabditis elegans] ref|NP_500705.2| T28H11.8 [Caenorhabditis elegans] 0.0
blast CAE72808 Hypothetical protein CBG20085 [Caenorhabditis briggsae] 0.0
blast CAA94292 Hypothetical protein K08C7.1 [Caenorhabditis elegans] ref|NP_501967.2| K08C7.1 [Caenorhabditis elegans] 5.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500705.2 12 7-29,59-81,88-106,111-133,146-168,178-200,241-263,278-297,310-332,336-358,371-393,403-425
T28H11.8.1 12 7-29,59-81,88-106,111-133,146-168,178-200,241-263,278-297,310-332,336-358,371-393,403-425
T28H11.8.2 12 7-29,59-81,88-106,111-133,146-168,178-200,241-263,278-297,310-332,336-358,371-393,403-425
Sequence
Target Sequence 
>C. ELEGANS:190998_AT
tctgcaattcctcagttaatcgcgattttcattaaaattgggtgtggtagattattagac
ttatttatgatttttttcttacatgtcaaagaatgttatgtgaaattcgggtgtggtccg
aagctaactcttgtcgtgcctcttcttatcttggaatcaatgagtgctttctccctgttc
ctcactggatttctggatgaccgtgtgtggtcgttgatctttatgatgatctttgcatct
cttcacttctttgttccagtcatttgcagtagaactattcaaattagagctggccaacat
tctcacttcgcattgaacttaaatatggtgattgctggaattgcacagatcttgattcca
ctgggagttcaagcagcggtacctgaaaatacaagaagccagtggtccttcgtattctac
ttcctcgtcatcacagtagtcatcacatcaattctctacacactgttctcccgagcgaca
cctgccgaatggacaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGCAATTCCTCAGTTAATCGCGA 401 607 856 Antisense
GTCCGAAGCTAACTCTTGTCGTGCC 556 475 971 Antisense
GTGCCTCTTCTTATCTTGGAATCAA 170 479 991 Antisense
AATCAATGAGTGCTTTCTCCCTGTT 375 171 1010 Antisense
CCTGTTCCTCACTGGATTTCTGGAT 269 267 1029 Antisense
GATGATCTTTGCATCTCTTCACTTC 309 411 1080 Antisense
TAGAGCTGGCCAACATTCTCACTTC 474 653 1140 Antisense
AGAAGCCAGTGGTCCTTCGTATTCT 641 73 1249 Antisense
TTCCTCGTCATCACAGTAGTCATCA 225 699 1276 Antisense
GTCATCACATCAATTCTCTACACAC 657 467 1294 Antisense
GCGACACCTGCCGAATGGACAATGA 142 289 1330 Antisense
Sequence Source Affymetrix Proprietary Database