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Cluster Members
Consensus/Exemplar

GeneChip Array Information

Probe Set ID

190997_at

GeneChip Array

C. elegans Genome Array

Organism Common Name

Nematode

Probe Design Information

Transcript ID(Array Design)

affy.Ce.7538

Sequence Type

Exemplar sequence

Representative Public ID

K01A11.2 NCBI

Target Description

K01A11.2 /REP_DB=WormBase Gene ID /WP=CE03450 /TR=Q21069 /GB=CAA91342.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Yeast YIL-0 like protein

Cluster Evidence

This cluster is supported by a Sanger Annotation.

Annotation Method Description

Annotation Description

This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).

Annotation Grade

This is a grade A annotation.

Annotation Transcript Cluster (# of Matching Probes)

NM_065306(11)

Transcript Assignments

Representative Transcript	Description	Matching Probes	Related Probesets by Grade
NM_065306 NCBI	Caenorhabditis elegans K01A11.2 (K01A11.2) mRNA, complete cds.	11/11	None
SNAP00000013899 ENSEMBL	cdna:SNAP chromosome:CEL140:III:3418682:3427995:1	11/11	None
GENEFINDER00000013908 ENSEMBL	cdna:GeneFinder chromosome:CEL140:III:3425727:3427995:1	11/11	None
K01A11.2 ENSEMBL	cdna:known chromosome:CEL140:III:3425727:3427995:1 gene:K01A11.2	11/11	None

Annotation Notes

There are no noteworthy cross hybridizing mRNAs found for this probe set.

Genomic Alignment of Consensus/Exemplar Sequence

Assembly

Wormbase March 2004

Alignment(s)

Position	Identity	Coverage	Cytoband
chrIII:3425726-3427995(+)	99.71	100.0

Public Domain and Genome References

Gene Title

Yeast YIL-0 like protein

Ensembl

K01A11.2

Entrez Gene

186828 Entrez gene

SwissProt

Q21069 EMBL-EBI

WormBase

CE03450 Wormbase

Functional Annotations

Ortholog

ID	Title	Organism
ATGENOME1:12054_AT	expressed protein	at
ATH1-121501:245316_AT	expressed protein	at
DROSOPHILA_2:1634796_AT		dm
DROSGENOME1:145686_AT		dm
CHICKEN:GGA.8733.1.S1_AT	similar to hypothetical protein MGC9084	gga
HG-U133_PLUS_2:213528_AT	chromosome 1 open reading frame 156	hs
HG-U133A_2:213528_AT	chromosome 1 open reading frame 156	hs
HG-U133A:213528_AT	chromosome 1 open reading frame 156	hs
HU35KSUBB:RC_N74574_AT	chromosome 1 open reading frame 156	hs
U133_X3P:HS.33922.0.S1_3P_AT	chromosome 1 open reading frame 156	hs
HG-U95AV2:35677_AT	chromosome 1 open reading frame 156	hs
MOUSE430A_2:1429137_AT	RIKEN cDNA 2810422O20 gene	mm
MOUSE430_2:1429137_AT	RIKEN cDNA 2810422O20 gene	mm
MOE430A:1429137_AT	RIKEN cDNA 2810422O20 gene	mm
MU11KSUBA:AA241872_S_AT	RIKEN cDNA 2810422O20 gene	mm
MG-U74AV2:160999_R_AT	RIKEN cDNA 2810422O20 gene	mm
MU19KSUBB:TC25858_AT	RIKEN cDNA 2810422O20 gene (2810422O20Rik), mRNA	mm
RAE230B:1380565_AT	similar to 2810422O20Rik protein (predicted)	rn
RAT230_2:1380565_AT	similar to 2810422O20Rik protein (predicted)	rn

Protein Similarities

Method	ID	Description	E-Value
blast	CAA91344	Hypothetical protein F59A2.6 [Caenorhabditis elegans] emb\|CAA84332.1\| Hypothetical protein F59A2.6 [Caenorhabditis elegans] ref\|NP_497706.1\| F59A2.6 [Caenorhabditis elegans]	0.0
blast	CAE65028	Hypothetical protein CBG09866 [Caenorhabditis briggsae]	1.0E-160
blast	CAA91342	Hypothetical protein K01A11.2 [Caenorhabditis elegans] ref\|NP_497707.1\| K01A11.2 [Caenorhabditis elegans]	1.0E-129
blast	CAA91342	Hypothetical protein K01A11.2 [Caenorhabditis elegans] ref\|NP_497707.1\| K01A11.2 [Caenorhabditis elegans]	1.0E-128
blast	CAE65029	Hypothetical protein CBG09867 [Caenorhabditis briggsae]	1.0E-117
blast	CAA91342	Hypothetical protein K01A11.2 [Caenorhabditis elegans] ref\|NP_497707.1\| K01A11.2 [Caenorhabditis elegans]	1.0E-116
blast	CAE65029	Hypothetical protein CBG09867 [Caenorhabditis briggsae]	1.0E-104
blast	XP_422244	PREDICTED: similar to hypothetical protein MGC9084 [Gallus gallus]	1.0E-31

Protein Domains

Database	ID	Description	E-Value
Pfam	IPR003900 EMBL-EBI	RepA / Rep+ protein KID	0.86
Pfam	IPR003900 EMBL-EBI	RepA / Rep+ protein KID	16.0
Pfam	IPR003900 EMBL-EBI	RepA / Rep+ protein KID	30.0
Pfam	IPR003900 EMBL-EBI	RepA / Rep+ protein KID	21.0
Pfam	IPR003900 EMBL-EBI	RepA / Rep+ protein KID	21.0
Pfam	IPR003900 EMBL-EBI	RepA / Rep+ protein KID	110.0
Pfam	IPR000237 EMBL-EBI	GRIP domain	8.4E-27

Sequence

Target Sequence

>C. ELEGANS:190997_AT
gaatgcaccgtcgatctttgcgactatatcgaagaaaatcaaacgcttttcgccggaaaa
tcagttctagagctcggctgtggagcagctcttccatcaattctcacggcggtacacgga
gctaaggaagttttcgctcaggactttaacgcgtcagtcatcgagttcttcacacttcca
aacttcgaagaaaatccgcattcagcagttgttcaaggagaagcaatgggatgggaagag
gttccgaatcgattgagcggaagaaaattcgacttcattctctcatcggaaaccatttac
aacgaagatgactatcaagctctccacgatgcggtcgctgcaacaatcaaggatgacgga
gtcgcatggttcgccgcgaaattcttctactttggcgtcggcggaagtgttccagcattc
tgcgaatttatcaatcaacgcggaattcttcaagcttctga

BLASTn GenBank NR

Probe Info

Probe Sequence(5'-3')	Probe X	Probe Y	Probe Interrogation Position	Strandedness
GAATGCACCGTCGATCTTTGCGACT	621	329	184	Antisense
GCTGTGGAGCAGCTCTTCCATCAAT	523	295	260	Antisense
TTCCATCAATTCTCACGGCGGTACA	260	595	275	Antisense
TAACGCGTCAGTCATCGAGTTCTTC	382	639	330	Antisense
AAATCCGCATTCAGCAGTTGTTCAA	25	119	375	Antisense
GAAAATTCGACTTCATTCTCTCATC	539	353	446	Antisense
GAAGATGACTATCAAGCTCTCCACG	200	339	487	Antisense
GGATGACGGAGTCGCATGGTTCGCC	515	511	534	Antisense
CGCCGCGAAATTCTTCTACTTTGGC	114	255	555	Antisense
GCGGAAGTGTTCCAGCATTCTGCGA	69	295	584	Antisense
AACGCGGAATTCTTCAAGCTTCTGA	477	145	620	Antisense

Sequence Source

Affymetrix Proprietary Database

Description	K01A11.2 /REP_DB=WormBase Gene ID /WP=CE03450 /TR=Q21069 /GB=CAA91342.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Yeast YIL-0 like protein
Cluster	6grp_highest_10_10 > 79 6grp_high1_10_10 > 97 4grp_highest_8_8 > 23 4grp_high_8_8 > 06 6grp_highest_nonorm > 83 6grp_total > 89 4grp_total > 02 6grp_highest_sub > In 6grp_high1_sub > In 4grp_rule_based > L4