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[190995_at] Aldehyde dehydrogenase

Description F01F1.6 /REP_DB=WormBase Gene ID /WP=CE01232 /TR=SW:P46562 /GB=AAC46640.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Aldehyde dehydrogenase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 23      6grp_total > 41      4grp_total > 57      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1889
1 2 3 4 range
A 1058.2
(-2.4)
P 		2598.1
(3)
P 		2409.4
(2.3)
P 		893
(-3)
P 		1705
B 1341.1
(-1.6)
P 		2355
(2)
P 		2634.9
(3)
P 		956.1
(-3)
P 		1679
C 1027.3
(-2)
P 		2521.4
(3)
P 		2341.7
(2.4)
P 		745.9
(-3)
P 		1776
avr 1142.2
(-2) 		2491.5
(3) 		2462
(2.9) 		865
(-3) 		1627

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2688
1 2 3 4 5 6 range
A 2059.8
(-0.5)
P 		2333
(0.1)
P 		3617
(3)
P 		1981.6
(-0.7)
P 		1431.9
(-1.9)
P 		928.9
(-3)
P 		2688
B 1990.1
(-0.9)
P 		2577.5
(1)
P 		3229.4
(3)
P 		2420.4
(0.5)
P 		1313.8
(-3)
P 		1333.4
(-2.9)
P 		1916
C 1560
(-1.3)
P 		2329.9
(0.9)
P 		3086.6
(3)
P 		2334.6
(0.9)
P 		1087.3
(-2.6)
P 		959.6
(-3)
P 		2127
avr 1870
(-0.9) 		2413.5
(0.6) 		3311
(3) 		2245.5
(0.1) 		1277.7
(-2.5) 		1074
(-3) 		2237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 690
1 2 3 4 range
A 385.3
(0.1)
P 		564
(2.2)
P 		629.9
(3)
P 		130.7
(-3)
P 		499
B 427.7
(0.3)
P 		581.6
(2.6)
P 		610.6
(3)
P 		203.8
(-3)
P 		407
C 340.1
(-1.1)
P 		724.9
(2.2)
P 		816.2
(3)
P 		125.8
(-3)
P 		690
avr 384.4
(-0.4) 		623.5
(2.3) 		685.6
(3) 		153.4
(-3) 		532

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 632
1 2 3 4 5 6 range
A 379.7
(-1.5)
P 		829.7
(3)
P 		787.7
(2.6)
P 		502.6
(-0.3)
P 		432.1
(-1)
P 		226.2
(-3)
P 		604
B 692.5
(0.2)
P 		858
(3)
P 		784.2
(1.8)
P 		641.1
(-0.6)
P 		533.8
(-2.4)
P 		497.2
(-3)
P 		361
C 578.2
(0.3)
P 		710.9
(2)
P 		785.6
(3)
P 		469.5
(-1.1)
P 		351.8
(-2.6)
P 		321.2
(-3)
P 		464
avr 550.1
(-0.3) 		799.5
(3) 		785.8
(2.8) 		537.7
(-0.5) 		439.2
(-1.8) 		348.2
(-3) 		451
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190995_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7597
Sequence Type Exemplar sequence
Representative Public ID F01F1.6 NCBI
Target Description F01F1.6 /REP_DB=WormBase Gene ID /WP=CE01232 /TR=SW:P46562 /GB=AAC46640.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Aldehyde dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065862(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065862 NCBI Caenorhabditis elegans ALdehyde deHydrogenase family member (alh-9) (alh-9) mRNA, complete cds. 11/11 None
SNAP00000009919 ENSEMBL cdna:SNAP chromosome:CEL140:III:5857159:5858899:1 11/11 None
GENEFINDER00000009942 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5857159:5858899:1 11/11 None
F01F1.6.2 ENSEMBL cdna:known chromosome:CEL140:III:5855988:5859128:1 gene:F01F1.6 11/11 None
F01F1.6.3 ENSEMBL cdna:known chromosome:CEL140:III:5857157:5859126:1 gene:F01F1.6 11/11 None
F01F1.6.1 ENSEMBL cdna:known chromosome:CEL140:III:5857159:5859128:1 gene:F01F1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5857208-5858898(+) 100.0 100.0
Public Domain and Genome References
Gene Title Aldehyde dehydrogenase
Gene Symbol alh-9
Ensembl F01F1.6
Entrez Gene 175820 Entrez gene
SwissProt P46562 EMBL-EBI
WormBase CE01232 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:263157_AT aldehyde dehydrogenase, putative / antiquitin, putative at
ATGENOME1:16524_AT aldehyde dehydrogenase, putative / antiquitin, putative at
CANINE:1597346_AT similar to antiquitin cfa
CANINE:1589931_AT similar to antiquitin cfa
CANINE_2:CFA.15706.1.A1_AT similar to antiquitin cfa
CANINE_2:CFA.20667.1.S1_S_AT similar to antiquitin cfa
CANINE_2:CFA.403.1.A1_AT similar to antiquitin cfa
CANINE_2:CFA.403.1.A1_S_AT similar to antiquitin cfa
CANINE_2:CFAAFFX.1496.1.S1_S_AT similar to antiquitin cfa
DROSOPHILA_2:1623216_S_AT dm
DROSGENOME1:152003_AT dm
HG-U133A_2:208950_S_AT aldehyde dehydrogenase 7 family, member A1 hs
HG-U133A:208950_S_AT aldehyde dehydrogenase 7 family, member A1 hs
HG-U133_PLUS_2:208950_S_AT aldehyde dehydrogenase 7 family, member A1 hs
HUGENEFL:S74728_AT aldehyde dehydrogenase 7 family, member A1 hs
HG-U133A:208951_AT aldehyde dehydrogenase 7 family, member A1 hs
HG-U133_PLUS_2:208951_AT aldehyde dehydrogenase 7 family, member A1 hs
HG-FOCUS:208951_AT aldehyde dehydrogenase 7 family, member A1 hs
HG-U133A_2:208951_AT aldehyde dehydrogenase 7 family, member A1 hs
U133_X3P:G12803386_3P_A_AT aldehyde dehydrogenase 7 family, member A1 hs
HG-U95AV2:36132_AT aldehyde dehydrogenase 7 family, member A1 hs
HU35KSUBB:RC_T83654_AT Aldehyde dehydrogenase 7 family, member A1 hs
U133_X3P:HS.74294.1.S1_3P_AT Aldehyde dehydrogenase 7 family, member A1 hs
HG-U133A_2:213591_AT Aldehyde dehydrogenase 7 family, member A1 hs
HG-U133_PLUS_2:213591_AT Aldehyde dehydrogenase 7 family, member A1 hs
HG-U133A:213591_AT Aldehyde dehydrogenase 7 family, member A1 hs
HG-U95C:61965_AT Aldehyde dehydrogenase 7 family, member A1 hs
HG-U95E:68956_AT Aldehyde dehydrogenase 7 family, member A1 hs
HG-U95E:79496_R_AT Aldehyde dehydrogenase 7 family, member A1 hs
HG-U95B:46075_AT Aldehyde dehydrogenase 7 family, member A1 hs
HU35KSUBC:RC_W58291_AT Aldehyde dehydrogenase 7 family, member A1 hs
MG-U74AV2:97450_S_AT aldehyde dehydrogenase family 7, member A1 mm
MU11KSUBA:AA560507_S_AT aldehyde dehydrogenase family 7, member A1 mm
MU11KSUBB:MSA.18398.0_S_AT aldehyde dehydrogenase family 7, member A1 mm
MU11KSUBB:MSA.16272.0_S_AT aldehyde dehydrogenase family 7, member A1 mm
MG-U74AV2:97449_AT aldehyde dehydrogenase family 7, member A1 mm
MOE430A:1460167_AT aldehyde dehydrogenase family 7, member A1 mm
MOUSE430A_2:1460167_AT aldehyde dehydrogenase family 7, member A1 mm
MOUSE430_2:1460167_AT aldehyde dehydrogenase family 7, member A1 mm
MOE430A:1448137_AT aldehyde dehydrogenase family 7, member A1 mm
MOUSE430A_2:1448137_AT aldehyde dehydrogenase family 7, member A1 mm
MOUSE430_2:1448137_AT aldehyde dehydrogenase family 7, member A1 mm
MOE430A:1415902_AT aldehyde dehydrogenase family 7, member A1 mm
MOUSE430A_2:1415902_AT aldehyde dehydrogenase family 7, member A1 mm
MOUSE430_2:1415902_AT aldehyde dehydrogenase family 7, member A1 mm
MU19KSUBC:TC35920_AT Aldehyde dehydrogenase family 7, member A1 (Aldh7a1), mRNA mm
RG-U34A:S75019_AT aldehyde dehydrogenase family 7, member A1 (predicted) rn
RG-U34A:S75019_G_AT aldehyde dehydrogenase family 7, member A1 (predicted) rn
RAE230A:1371567_AT aldehyde dehydrogenase family 7, member A1 (predicted) rn
RAT230_2:1371567_AT aldehyde dehydrogenase family 7, member A1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46640 Aldehyde dehydrogenase protein 9 [Caenorhabditis elegans] ref|NP_498263.1| ALdehyde deHydrogenase family member (alh-9) [Caenorhabditis elegans] sp|P46562|AL7A1_CAEEL Putative aldehyde dehydrogenase family 7 member A1 homolog 0.0
blast CAE64383 Hypothetical protein CBG09070 [Caenorhabditis briggsae] 0.0
blast AAM81354 aldehyde dehydrogenase [Steinernema feltiae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 1.0E-126
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190995_AT
acaattattggcccacttcacaaccaacaggccgttggaaagtacaaggcttcagttgcc
gaagcagttgcttctggaggaaagattgagtacggtggaaaagttcttgagagggatgga
aactttgttctcccaacaattgtcactggattgaagcacgattctccagttgttcttcgc
gagacttttgccccaattctctatgttctgaagttctcaaccctcgaggaagctattgca
atcaataatgaagttgatcaaggattgagttcttctctatttacaacaaatattcaaaat
gttttcaaatggatgggaccaaaaggaagtgactgtggaatcgtcaatgtcaacattccc
acatctggcgcagagatcggaggagccttcggcggagaaaaggagaccggtggaggtcgc
gaatcaggatccgactcctggaggcagtacatgagacgatccacctgcacgatcaattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATTATTGGCCCACTTCACAACC 512 113 1036 Antisense
GGATGGAAACTTTGTTCTCCCAACA 314 515 1149 Antisense
GAAGCACGATTCTCCAGTTGTTCTT 231 341 1188 Antisense
CAGTTGTTCTTCGCGAGACTTTTGC 51 205 1202 Antisense
TTGCCCCAATTCTCTATGTTCTGAA 124 703 1223 Antisense
GAAGTTCTCAACCCTCGAGGAAGCT 377 337 1245 Antisense
CAATGTCAACATTCCCACATCTGGC 345 183 1380 Antisense
ATCGGAGGAGCCTTCGGCGGAGAAA 485 35 1411 Antisense
GGTCGCGAATCAGGATCCGACTCCT 257 499 1450 Antisense
GAGGCAGTACATGAGACGATCCACC 204 405 1476 Antisense
ACGATCCACCTGCACGATCAATTAC 318 91 1491 Antisense
Sequence Source Affymetrix Proprietary Database