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[190993_at] 7TM chemoreceptor, srw family

Description T06G6.7 /REP_DB=WormBase Gene ID /WP=CE13345 /TR=O18053 /GB=CAB04706.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_total > 99      4grp_total > 21      6grp_cgc > 57      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 41
(-3)
A 		55.4
(2.8)
A 		42.8
(-2.3)
A 		55.9
(3)
A 		15
B 88.1
(3)
A 		60
(-0.2)
A 		42.4
(-2.1)
A 		34.6
(-3)
A 		54
C 60.2
(-1.4)
A 		45.8
(-2.7)
A 		42.5
(-3)
A 		107.2
(3)
A 		65
avr 63.1
(2.3) 		53.7
(-0.1) 		42.6
(-3) 		65.9
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 14.6
(-3)
A 		49.8
(-0.2)
A 		90.1
(3)
A 		22.2
(-2.4)
A 		31.2
(-1.7)
A 		53.8
(0.1)
A 		76
B 18.8
(-1.7)
A 		11.4
(-2.7)
A 		19.8
(-1.6)
A 		9.6
(-3)
A 		52.1
(3)
A 		50.7
(2.8)
A 		43
C 6.6
(-3)
A 		33.8
(0.4)
A 		14.4
(-2)
A 		49.2
(2.3)
A 		54.5
(3)
A 		40.8
(1.3)
A 		48
avr 13.3
(-3) 		31.7
(0.1) 		41.4
(1.8) 		27
(-0.7) 		45.9
(2.6) 		48.4
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14.9
(3)
A 		12
(0.4)
A 		11.2
(-0.3)
A 		8.2
(-3)
A 		7
B 28.1
(3)
A 		14.8
(-0.9)
A 		9.8
(-2.3)
A 		7.4
(-3)
A 		21
C 19.9
(3)
A 		13.2
(-3)
A 		14.8
(-1.6)
A 		18.1
(1.4)
A 		7
avr 21
(3) 		13.3
(-1.7) 		11.9
(-2.6) 		11.2
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.7
(-3)
A 		17.7
(2.3)
A 		19.6
(3)
A 		5.6
(-2)
A 		9.4
(-0.6)
A 		13.1
(0.7)
A 		17
B 6.5
(-1.7)
A 		3.8
(-2.6)
A 		4.8
(-2.3)
A 		2.6
(-3)
A 		21.2
(3)
A 		18.9
(2.3)
A 		19
C 2.5
(-3)
A 		10.3
(0.1)
A 		3.7
(-2.5)
A 		9.9
(-0.1)
A 		17.6
(3)
A 		13.7
(1.5)
A 		15
avr 3.9
(-3) 		10.6
(0.3) 		9.4
(-0.3) 		6
(-2) 		16.1
(3) 		15.2
(2.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2289
Sequence Type Exemplar sequence
Representative Public ID T06G6.7 NCBI
Target Description T06G6.7 /REP_DB=WormBase Gene ID /WP=CE13345 /TR=O18053 /GB=CAB04706.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060825 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-88) (srw-88) mRNA, complete cds. 11/11 None
GENEFINDER00000021723 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12726503:12730157:1 11/11 None
SNAP00000021713 ENSEMBL cdna:SNAP chromosome:CEL140:I:12728599:12730947:1 11/11 None
T06G6.7 ENSEMBL cdna:known chromosome:CEL140:I:12728275:12730157:1 gene:T06G6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12728205-12730088(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-88
Ensembl T06G6.7
Entrez Gene 188199 Entrez gene
SwissProt O18053 EMBL-EBI
WormBase CE13345 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04706 Hypothetical protein T06G6.7 [Caenorhabditis elegans] ref|NP_493226.1| Serpentine Receptor, class W family member (srw-88) [Caenorhabditis elegans] 0.0
blast CAB04706 Hypothetical protein T06G6.7 [Caenorhabditis elegans] ref|NP_493226.1| Serpentine Receptor, class W family member (srw-88) [Caenorhabditis elegans] 1.0E-167
blast CAB04705 Hypothetical protein T06G6.6 [Caenorhabditis elegans] ref|NP_493225.2| T06G6.6 [Caenorhabditis elegans] 1.0E-97
blast CAE67988 Hypothetical protein CBG13598 [Caenorhabditis briggsae] 1.0E-72
blast AAF60625 Serpentine receptor, class w protein 90 [Caenorhabditis elegans] ref|NP_503486.1| Serpentine Receptor, class W family member (srw-90) [Caenorhabditis elegans] 3.0E-55
blast AAP31433 Serpentine receptor, class w protein 89 [Caenorhabditis elegans] ref|NP_001024046.1| Serpentine Receptor, class W family member (srw-89) [Caenorhabditis elegans] 4.0E-49
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493226.1 7 20-42,49-71,110-132,145-167,217-239,260-282,308-330
T06G6.7 7 20-42,49-71,110-132,145-167,217-239,260-282,308-330
GENEFINDER00000021723 8 5-27,228-250,257-279,318-340,353-375,425-447,468-490,516-538
SNAP00000021713 5 55-77,90-112,162-184,205-227,253-275
Sequence
Target Sequence 
>C. ELEGANS:190993_AT
tgggcgccagggcttgattgtggcctagaatctatctatctagaatctagaaactatcca
gaattctcagtctatggccgtttgtgcaatgaattctcagctatccatgatggccttttc
catagaatccaagcagtcatagagggaatcttcgggaagttcataccatgtgtgcttctc
cccgtgctcacaatgatgctcattatgaagctacggagctcggatcaaaatgcggcaaga
aaccaaaagaaggaccgggcaacagtgattgtgatcttcatagctatcacctatctgtta
acggagctcccactggcatttgtgtatttggctgacgcaatttggcattacgataagaat
gctcactttcctaagacctatcacattgcttccagaacaatcatcaagcatctggaactc
ctctgcaatgccatctacaccgccaccgcctcaatcgactgtgtcatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGCGCCAGGGCTTGATTGTGGCC 125 555 526 Antisense
TTCTCAGTCTATGGCCGTTTGTGCA 501 691 589 Antisense
AATTCTCAGCTATCCATGATGGCCT 311 177 617 Antisense
AAGTTCATACCATGTGTGCTTCTCC 404 155 682 Antisense
TCCCCGTGCTCACAATGATGCTCAT 523 595 704 Antisense
ATCACCTATCTGTTAACGGAGCTCC 500 27 811 Antisense
AGCTCCCACTGGCATTTGTGTATTT 308 81 830 Antisense
AGAATGCTCACTTTCCTAAGACCTA 520 75 881 Antisense
TAAGACCTATCACATTGCTTCCAGA 325 637 897 Antisense
TCAAGCATCTGGAACTCCTCTGCAA 644 631 929 Antisense
CCGCCTCAATCGACTGTGTCATTTG 194 263 971 Antisense
Sequence Source Affymetrix Proprietary Database