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[190992_at] 7TM chemoreceptor, str family

Description C34D4.8 /REP_DB=WormBase Gene ID /WP=CE24826 /GEN=str-48 /TR=Q18441 /GB=AAB00693.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 93      4grp_total > 03      6grp_cgc > 99      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 8.7
(-3)
A 		17.5
(-2.1)
A 		8.8
(-3)
A 		70.7
(3)
A 		62
B 26.2
(-0.7)
A 		6.4
(-2.6)
A 		2.4
(-3)
A 		63.4
(3)
A 		61
C 5.9
(-3)
A 		6.4
(-3)
A 		6.1
(-3)
A 		82.8
(3)
P 		77
avr 13.6
(-2.3) 		10.1
(-2.6) 		5.8
(-3) 		72.3
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 15.8
(-1)
A 		3.4
(-3)
A 		4.1
(-2.9)
A 		4.8
(-2.8)
A 		39.7
(3)
A 		10
(-1.9)
A 		36
B 6.1
(-1.3)
A 		3.5
(-2.4)
A 		3.4
(-2.4)
A 		1.9
(-3)
A 		16.8
(3)
A 		2.2
(-2.9)
A 		15
C 5.3
(-2.6)
A 		32.4
(1.8)
A 		39.5
(3)
A 		2.9
(-3)
A 		2.8
(-3)
A 		12.9
(-1.3)
A 		37
avr 9.1
(-0.9) 		13.1
(0.6) 		15.7
(1.5) 		3.2
(-3) 		19.8
(3) 		8.4
(-1.1) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.2
(-2.3)
A 		3.8
(-1.9)
A 		2.3
(-3)
A 		10.3
(3)
A 		8
B 8.4
(0.6)
A 		1.6
(-2.5)
A 		0.6
(-3)
A 		13.5
(3)
A 		13
C 2
(-2.9)
A 		1.8
(-3)
A 		2.1
(-2.9)
A 		14
(3)
P 		12
avr 4.5
(-1.5) 		2.4
(-2.6) 		1.7
(-3) 		12.6
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.9
(-1.9)
A 		1.2
(-2.8)
A 		0.9
(-3)
A 		1.2
(-2.8)
A 		12
(3)
A 		2.4
(-2.2)
A 		11
B 2.1
(-1.5)
A 		1.1
(-2.4)
A 		0.8
(-2.7)
A 		0.5
(-3)
A 		6.8
(3)
A 		0.8
(-2.7)
A 		6
C 2
(-2.1)
A 		9.9
(2.9)
A 		10
(3)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		4.3
(-0.6)
A 		9
avr 2.3
(-1.4) 		4.1
(0.4) 		3.9
(0.2) 		0.8
(-3) 		6.6
(3) 		2.5
(-1.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10351
Sequence Type Exemplar sequence
Representative Public ID C34D4.8 NCBI
Target Description C34D4.8 /REP_DB=WormBase Gene ID /WP=CE24826 /GEN=str-48 /TR=Q18441 /GB=AAB00693.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068715(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068715 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-48) (str-48) mRNA, complete cds. 11/11 None
SNAP00000003795 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7122327:7123930:1 11/11 None
C34D4.8 ENSEMBL cdna:known chromosome:CEL140:IV:7122177:7123930:1 gene:C34D4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003811 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7122182-7123936(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-48
Ensembl C34D4.8
Entrez Gene 191980 Entrez gene
SwissProt Q18441 EMBL-EBI
WormBase CE24826 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00693 Seven tm receptor protein 48 [Caenorhabditis elegans] ref|NP_501116.1| Seven TM Receptor family member (str-48) [Caenorhabditis elegans] 0.0
blast AAB00693 Seven tm receptor protein 48 [Caenorhabditis elegans] ref|NP_501116.1| Seven TM Receptor family member (str-48) [Caenorhabditis elegans] 1.0E-162
blast CAE61805 Hypothetical protein CBG05772 [Caenorhabditis briggsae] 1.0E-130
blast CAE61805 Hypothetical protein CBG05772 [Caenorhabditis briggsae] 1.0E-109
blast CAE61807 Hypothetical protein CBG05774 [Caenorhabditis briggsae] 2.0E-98
blast NP_504980 Seven TM Receptor family member (str-47) [Caenorhabditis elegans] gb|AAG24044.1| Seven tm receptor protein 47 [Caenorhabditis elegans] 1.0E-78
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501116.1 7 15-32,45-67,87-109,130-152,197-219,243-265,280-302
C34D4.8 7 15-32,45-67,87-109,130-152,197-219,243-265,280-302
SNAP00000003795 5 41-63,83-105,147-169,193-215,230-252
Sequence
Target Sequence 
>C. ELEGANS:190992_AT
gtgtcattctttggatgctttacccattcatttgtggagcattttatggtgttccattgt
ttctttttggactccctgatgagtatggagatgaatattttggagaacaacttctagtgt
cttatggacttgcaatcaaggaagtgcccaggtttccaattattgcatatgacaaagacg
gatctctgagacatggtgcattttttgtgataactggatcaattgtgatggctgtgcaat
acactataataatttactgtgggattcgaatgcatttagtgatgacaagagaattcaaaa
actcttctgttccaaacaaaaaactacagaaacagttcttcaaagctttagtagtgcaga
caattgttccgacttttatatttgtgtgtcctgctgctttcgtattactttgtccgttct
taaatcttgaaatgaactatcaaactggttggatttatgcagcactgagtctgtatccac
cattggatagtcttgttttaatgatattggtatcggaatatcgaaaagctataaaaggtc
tctgtgagtacttgtttcctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCATTCTTTGGATGCTTTACCC 378 487 404 Antisense
GATGCTTTACCCATTCATTTGTGGA 455 413 417 Antisense
GTTTCTTTTTGGACTCCCTGATGAG 57 449 462 Antisense
AAGTGCCCAGGTTTCCAATTATTGC 340 157 545 Antisense
GGATCTCTGAGACATGGTGCATTTT 605 511 583 Antisense
GCAGACAATTGTTCCGACTTTTATA 222 313 759 Antisense
TTTATATTTGTGTGTCCTGCTGCTT 657 673 778 Antisense
CTGCTGCTTTCGTATTACTTTGTCC 542 237 794 Antisense
TACTTTGTCCGTTCTTAAATCTTGA 583 637 809 Antisense
TGCAGCACTGAGTCTGTATCCACCA 190 577 861 Antisense
GTCTCTGTGAGTACTTGTTTCCTAA 573 469 941 Antisense
Sequence Source Affymetrix Proprietary Database