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[190989_at] Ribosomal protein L11

Description B0303.15 /REP_DB=WormBase Gene ID /WP=CE00004 /TR=SW:P34264 /GB=AAA27905.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein L11
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 30      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 32      6grp_total > 44      4grp_total > 52      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1112
1 2 3 4 range
A 1649.1
(0.8)
P 		2007.6
(3)
P 		1281.5
(-1.5)
P 		1031.7
(-3)
P 		976
B 1993.3
(3)
P 		1527.8
(0.4)
P 		1600.6
(0.8)
P 		915.9
(-3)
P 		1077
C 1707.5
(2.5)
P 		1540
(1.4)
P 		1778.7
(3)
P 		895.6
(-3)
P 		883
avr 1783.3
(3) 		1691.8
(2.3) 		1553.6
(1.4) 		947.7
(-3) 		836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 947
1 2 3 4 5 6 range
A 1572.9
(2.9)
P 		1101.8
(-0.9)
P 		1586.9
(3)
P 		861.7
(-2.8)
P 		841.7
(-3)
P 		1043.3
(-1.4)
P 		745
B 1321.7
(0.3)
P 		1576.6
(2.2)
P 		1686.9
(3)
P 		876
(-3)
P 		950.3
(-2.5)
P 		1091.2
(-1.4)
P 		811
C 960.1
(-1.1)
P 		1445.6
(3)
P 		1366.1
(2.3)
P 		1223.2
(1.1)
P 		740.1
(-3)
P 		1191.8
(0.8)
P 		706
avr 1284.9
(0.8) 		1374.7
(1.5) 		1546.6
(3) 		987
(-1.8) 		844
(-3) 		1108.8
(-0.7) 		703
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 485
1 2 3 4 range
A 600.4
(3)
P 		435.8
(0.8)
P 		335
(-0.5)
P 		151
(-3)
P 		449
B 635.6
(3)
P 		377.3
(-0.5)
P 		370.9
(-0.6)
P 		195.2
(-3)
P 		440
C 565.2
(2.3)
P 		442.8
(0.7)
P 		619.9
(3)
P 		151
(-3)
P 		469
avr 600.4
(3) 		418.6
(0.5) 		441.9
(0.8) 		165.7
(-3) 		435

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 290
(-0.5)
P 		391.9
(3)
P 		345.6
(1.4)
P 		218.5
(-3)
P 		254
(-1.8)
P 		254
(-1.8)
P 		173
B 459.9
(1.7)
P 		524.8
(3)
P 		409.6
(0.6)
P 		232
(-3)
P 		386.1
(0.2)
P 		406.9
(0.6)
P 		293
C 355.9
(0.5)
P 		441.1
(3)
P 		347.7
(0.2)
P 		246
(-2.8)
P 		239.5
(-3)
P 		399
(1.7)
P 		202
avr 368.6
(0.7) 		452.6
(3) 		367.6
(0.7) 		232.2
(-3) 		293.2
(-1.3) 		353.3
(0.3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6565
Sequence Type Exemplar sequence
Representative Public ID B0303.15 NCBI
Target Description B0303.15 /REP_DB=WormBase Gene ID /WP=CE00004 /TR=SW:P34264 /GB=AAA27905.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein L11
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066522 NCBI Caenorhabditis elegans B0303.15 (B0303.15) mRNA, complete cds. 11/11 None
B0303.15 ENSEMBL cdna:known chromosome:CEL140:III:8717544:8718401:1 gene:B0303.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8717544-8718368(+) 100.0 100.0
Public Domain and Genome References
Gene Title Ribosomal protein L11
Ensembl B0303.15
Entrez Gene 181917 Entrez gene
SwissProt P34264 EMBL-EBI
WormBase CE00004 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253138_AT ribosomal protein L11 family protein at
CANINE:1590129_AT similar to 39S ribosomal protein L11, mitochondrial precursor (L11mt) (MRP-L11) cfa
CANINE_2:CFA.15696.1.S1_S_AT similar to 39S ribosomal protein L11, mitochondrial precursor (L11mt) (MRP-L11) cfa
DROSGENOME1:142024_AT mitochondrial ribosomal protein L11 dm
DROSOPHILA_2:1639715_AT mitochondrial ribosomal protein L11 dm
DROSGENOME1:149898_AT mitochondrial ribosomal protein L11 dm
HU35KSUBA:RC_AA443683_AT mitochondrial ribosomal protein L11 hs
HG-U133A:219162_S_AT mitochondrial ribosomal protein L11 hs
HG-U133_PLUS_2:219162_S_AT mitochondrial ribosomal protein L11 hs
HG-U133A_2:219162_S_AT mitochondrial ribosomal protein L11 hs
U133_X3P:G7705617_3P_S_AT mitochondrial ribosomal protein L11 hs
HG-U95B:45278_AT mitochondrial ribosomal protein L11 hs
HG-U95C:54772_AT Mitochondrial ribosomal protein L11 hs
MG-U74AV2:98876_AT mitochondrial ribosomal protein L11 mm
MOE430A:1417918_AT mitochondrial ribosomal protein L11 mm
MOUSE430A_2:1417918_AT mitochondrial ribosomal protein L11 mm
MOUSE430_2:1417918_AT mitochondrial ribosomal protein L11 mm
MOE430A:1437839_X_AT mitochondrial ribosomal protein L11 mm
MOUSE430A_2:1437839_X_AT mitochondrial ribosomal protein L11 mm
MOUSE430_2:1437839_X_AT mitochondrial ribosomal protein L11 mm
MOE430A:1437131_X_AT mitochondrial ribosomal protein L11 mm
MOUSE430A_2:1437131_X_AT mitochondrial ribosomal protein L11 mm
MOUSE430_2:1437131_X_AT mitochondrial ribosomal protein L11 mm
MOE430A:1438080_AT mitochondrial ribosomal protein L11 mm
MOUSE430A_2:1438080_AT mitochondrial ribosomal protein L11 mm
MOUSE430_2:1438080_AT mitochondrial ribosomal protein L11 mm
MU19KSUBA:TC19221_I_AT MRPL11 mRNA for mitochondrial ribosomal protein L11 (L11mt) mm
MU19KSUBA:TC19221_S_AT MRPL11 mRNA for mitochondrial ribosomal protein L11 (L11mt) mm
RG-U34A:RC_AA892422_AT mitochondrial ribosomal protein L11 rn
RAE230A:1367506_AT mitochondrial ribosomal protein L11 rn
RAE230B:1367506_AT mitochondrial ribosomal protein L11 rn
RAT230_2:1367506_AT mitochondrial ribosomal protein L11 rn
YEAST_2:1774253_AT Mitochondrial ribosomal protein of the large subunit Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27905 Hypothetical protein B0303.15 [Caenorhabditis elegans] ref|NP_498923.1| B0303.15 [Caenorhabditis elegans] sp|P34264|RM11_CAEEL Probable 39S ribosomal protein L11, mitochondrial precursor 8.0E-97
blast CAE69289 Hypothetical protein CBG15344 [Caenorhabditis briggsae] 9.0E-93
blast AAX62475 mitochondrial ribosomal protein L11 [Lysiphlebus testaceipes] 9.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR000911 EMBL-EBI Ribosomal protein L11 3.3E-31
Pfam IPR000911 EMBL-EBI Ribosomal protein L11 4.8E-32
Sequence
Target Sequence 
>C. ELEGANS:190989_AT
atggcaagcaaaggtgcggcccgtgtcagaaagaaggagattgtcaaagttgttcatgga
gcgttactcagaaccaatattaaagcacaaatggcgtcggctgctccaccacttggacca
caacttggtcaacgtgggctcaatgtcgcgaatttttgcaaagagttcaacaaagaaaca
ggccatttcaaacaaggagtcccacttcccacacgaatcactgtaaagccagatagaaca
tatgatttggagatttgtacaccgacgacgacatggcttttgaaacaagccgctggtatt
gggagaggaaaagcaagtaaagacgaaatcgttggaaaattaacggtaaaacatctgtat
gaaatcgccaaaatcaaatcacgagataaagctttacaacacgtcccgcttgaacaaatc
tgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAAGCAAAGGTGCGGCCCGTG 214 53 13 Antisense
GTGCGGCCCGTGTCAGAAAGAAGGA 323 477 26 Antisense
AAAGCACAAATGGCGTCGGCTGCTC 552 123 94 Antisense
CACAACTTGGTCAACGTGGGCTCAA 432 193 131 Antisense
GGGCTCAATGTCGCGAATTTTTGCA 109 493 148 Antisense
TTCAAACAAGGAGTCCCACTTCCCA 203 685 199 Antisense
CACTTCCCACACGAATCACTGTAAA 64 197 215 Antisense
GAGATTTGTACACCGACGACGACAT 187 397 262 Antisense
GAAACAAGCCGCTGGTATTGGGAGA 349 355 294 Antisense
GATAAAGCTTTACAACACGTCCCGC 248 389 397 Antisense
CACGTCCCGCTTGAACAAATCTGTC 85 199 412 Antisense
Sequence Source Affymetrix Proprietary Database