[Home] | [Total List]

[190988_at]

Description ZC410.5 /REP_DB=WormBase Gene ID /WP=CE15209 /TR=P91844 /GB=CAA92570.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=microfilarial antigen like
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 85      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 49      6grp_total > 75      4grp_total > 05      6grp_highest_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5379
1 2 3 4 range
A 2572.7
(-0.5)
P 		778.7
(-2.8)
P 		622.9
(-3)
P 		5220.9
(3)
P 		4598
B 2404.7
(-0.9)
P 		901.7
(-2.8)
P 		769.1
(-3)
P 		5514.2
(3)
P 		4745
C 2568.2
(-1)
P 		902.5
(-2.9)
P 		790.6
(-3)
P 		6001.5
(3)
P 		5211
avr 2515.2
(-0.8) 		861
(-2.8) 		727.5
(-3) 		5578.9
(3) 		4851

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5183
1 2 3 4 5 6 range
A 2474.6
(-3)
P 		3661.5
(-1.6)
P 		5777.6
(0.8)
P 		5110.5
(0.1)
P 		4116.2
(-1.1)
P 		7657.4
(3)
P 		5183
B 2565.5
(-3)
P 		3675.5
(-1.4)
P 		4842.9
(0.2)
P 		4138.2
(-0.8)
P 		4475.5
(-0.3)
P 		6797.1
(3)
P 		4232
C 3448.1
(-3)
P 		3703.2
(-2.6)
P 		4902.1
(-0.8)
P 		4209
(-1.9)
P 		4679.4
(-1.2)
P 		7485.9
(3)
P 		4038
avr 2829.4
(-3) 		3680.1
(-1.9) 		5174.2
(0.1) 		4485.9
(-0.8) 		4423.7
(-0.9) 		7313.5
(3) 		4484
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1012
1 2 3 4 range
A 936.7
(3)
P 		169
(-3)
P 		162.8
(-3)
P 		764.2
(1.7)
P 		774
B 766.9
(0.5)
P 		222.7
(-2.7)
P 		178.2
(-3)
P 		1175.1
(3)
P 		997
C 850.1
(1.7)
P 		259.5
(-3)
P 		275.5
(-2.9)
P 		1012
(3)
P 		753
avr 851.2
(2) 		217.1
(-2.9) 		205.5
(-3) 		983.8
(3) 		778

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2078
1 2 3 4 5 6 range
A 456.2
(-3)
P 		1302.2
(0.6)
P 		1258.2
(0.4)
P 		1296.2
(0.6)
P 		1242.1
(0.3)
P 		1864.3
(3)
P 		1408
B 892.7
(-3)
P 		1223.4
(-1.8)
P 		1176
(-2)
P 		1096.1
(-2.3)
P 		1818.3
(0.4)
P 		2534.6
(3)
P 		1642
C 1278.1
(-1.4)
P 		1130
(-2)
P 		1247.7
(-1.5)
P 		846.4
(-3)
P 		1514.2
(-0.6)
P 		2506
(3)
P 		1660
avr 875.7
(-3) 		1218.5
(-1.6) 		1227.3
(-1.5) 		1079.6
(-2.1) 		1524.9
(-0.3) 		2301.6
(3) 		1426
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8405
Sequence Type Exemplar sequence
Representative Public ID ZC410.5 NCBI
Target Description ZC410.5 /REP_DB=WormBase Gene ID /WP=CE15209 /TR=P91844 /GB=CAA92570.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=microfilarial antigen like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028427(11), NM_001028428(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028427 NCBI Caenorhabditis elegans ZC410.5a (ZC410.5) mRNA, complete cds. 11/11 None
NM_001028428 NCBI Caenorhabditis elegans ZC410.5b (ZC410.5) mRNA, complete cds. 9/11 None
GENEFINDER00000030937 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9088591:9092005:1 11/11 None
ZC410.5b ENSEMBL cdna:known chromosome:CEL140:IV:9088591:9092151:1 gene:ZC410.5 9/11 None
ZC410.5a ENSEMBL cdna:known chromosome:CEL140:IV:9088591:9092173:1 gene:ZC410.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030926 3/11 Cross Hyb Matching Probes None
SNAP00000030927 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9088596-9092011(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC410.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92570 Hypothetical protein ZC410.5a [Caenorhabditis elegans] ref|NP_001023598.1| ZC410.5a [Caenorhabditis elegans] 4.0E-76
blast CAE46688 Hypothetical protein ZC410.5b [Caenorhabditis elegans] ref|NP_001023599.1| ZC410.5b [Caenorhabditis elegans] 2.0E-67
blast CAA92570 Hypothetical protein ZC410.5a [Caenorhabditis elegans] ref|NP_001023598.1| ZC410.5a [Caenorhabditis elegans] 3.0E-64
blast CAE46688 Hypothetical protein ZC410.5b [Caenorhabditis elegans] ref|NP_001023599.1| ZC410.5b [Caenorhabditis elegans] 4.0E-64
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023598.1 2 13-32,154-173
NP_001023599.1 2 13-32,138-157
ZC410.5b 2 13-32,138-157
ZC410.5a 2 13-32,154-173
GENEFINDER00000030937 2 13-32,154-173
Sequence
Target Sequence 
>C. ELEGANS:190988_AT
aagtcagtctgtagccatgtttggaagagtatctgctgttttattgcttctcgccgtctc
agcacatgctggattctttgatgatgttcaaggagtcacatctgatgtcggaaacttctt
ttcaaatcaattccagaatgcgaaggatttgttctcaaatgatcaaaatgaattagagaa
gaatgttcaaagagtcaaggatttattgactggattaaaagaaaaagtgaagggattgga
accattggcaaatgatgcacagaaggaaacattgaagaaggttgatggattccttgctga
agtatcaagcttccagtcagaggtcaaggaagagggatccgccaaattcgaagagaataa
ggttaaatggcaaaatatggtcacggaaatgttcgacaagagtggtcttaacaatgtgct
caagctcgtcggaatgcagaattctgctccaagcgcattcatttcagccgctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCAGTCTGTAGCCATGTTTGGA 454 155 30 Antisense
GGAAGAGTATCTGCTGTTTTATTGC 391 531 52 Antisense
TCGCCGTCTCAGCACATGCTGGATT 613 597 80 Antisense
CACATCTGATGTCGGAAACTTCTTT 67 197 126 Antisense
AAACTTCTTTTCAAATCAATTCCAG 169 125 141 Antisense
GATGGATTCCTTGCTGAAGTATCAA 546 407 313 Antisense
GTATCAAGCTTCCAGTCAGAGGTCA 43 455 331 Antisense
GAGGGATCCGCCAAATTCGAAGAGA 14 403 361 Antisense
GTGGTCTTAACAATGTGCTCAAGCT 501 489 431 Antisense
TGCAGAATTCTGCTCCAAGCGCATT 88 579 464 Antisense
AAGCGCATTCATTTCAGCCGCTTTT 356 149 480 Antisense
Sequence Source Affymetrix Proprietary Database