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[190987_at] histidine acid phosphatase

Description R13H4.3 /REP_DB=WormBase Gene ID /WP=CE12804 /TR=P90949 /GB=CAB04655.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=histidine acid phosphatase
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_high_8_8 > 53      6grp_highest_nonorm > 64      6grp_total > 81      4grp_total > 58      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 525
1 2 3 4 range
A 242.7
(-0.1)
P 		431
(2.8)
P 		445
(3)
P 		56.1
(-3)
P 		389
B 212.3
(-0)
P 		423.6
(3)
P 		392.4
(2.6)
P 		6.6
(-3)
A 		417
C 240
(-0.5)
P 		443.6
(2)
P 		531.9
(3)
P 		26.4
(-3)
A 		506
avr 231.7
(-0.2) 		432.7
(2.7) 		456.4
(3) 		29.7
(-3) 		427

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1642
1 2 3 4 5 6 range
A 353.6
(-3)
P 		498.4
(-2.3)
P 		413.3
(-2.7)
P 		1550.1
(3)
P 		1499.1
(2.7)
P 		699.7
(-1.3)
P 		1197
B 381.3
(-3)
P 		520.3
(-2.4)
P 		457.6
(-2.7)
P 		1754.3
(3)
P 		1437.8
(1.6)
P 		759.2
(-1.3)
P 		1373
C 313.7
(-3)
P 		570.3
(-2.1)
P 		468.7
(-2.4)
P 		1956
(3)
P 		1254
(0.4)
P 		790.6
(-1.3)
P 		1642
avr 349.5
(-3) 		529.7
(-2.2) 		446.5
(-2.6) 		1753.5
(3) 		1397
(1.5) 		749.8
(-1.3) 		1404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 88.4
(1.5)
P 		93.5
(1.7)
P 		116.3
(3)
P 		8.2
(-3)
P 		108
B 67.7
(0.9)
P 		104.6
(3)
P 		90.9
(2.2)
P 		1.4
(-3)
A 		103
C 79.4
(-0.5)
P 		127.5
(1.1)
P 		185.4
(3)
P 		4.5
(-3)
A 		181
avr 78.5
(0.5) 		108.5
(1.9) 		130.9
(3) 		4.7
(-3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 519
1 2 3 4 5 6 range
A 65.2
(-3)
P 		177.3
(-1.3)
P 		90
(-2.6)
P 		393.2
(2.1)
P 		452.4
(3)
P 		170.4
(-1.4)
P 		387
B 132.7
(-2.7)
P 		173.2
(-2.2)
P 		111.1
(-3)
P 		464.7
(1.5)
P 		584.2
(3)
P 		283.1
(-0.8)
P 		473
C 116.3
(-3)
P 		174
(-1.8)
P 		119.3
(-2.9)
P 		393.4
(2.7)
P 		405.8
(3)
P 		264.7
(0.1)
P 		290
avr 104.7
(-3) 		174.8
(-1.9) 		106.8
(-3) 		417.1
(2) 		480.8
(3) 		239.4
(-0.9) 		376
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14647
Sequence Type Exemplar sequence
Representative Public ID R13H4.3 NCBI
Target Description R13H4.3 /REP_DB=WormBase Gene ID /WP=CE12804 /TR=P90949 /GB=CAB04655.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=histidine acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073582(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073582 NCBI Caenorhabditis elegans R13H4.3 (R13H4.3) mRNA, complete cds. 11/11 None
SNAP00000036680 ENSEMBL cdna:SNAP chromosome:CEL140:V:11836233:11838239:1 11/11 None
GENEFINDER00000036690 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11836236:11838239:1 11/11 None
R13H4.3 ENSEMBL cdna:known chromosome:CEL140:V:11836230:11838112:1 gene:R13H4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11836235-11838112(+) 100.0 100.0
Public Domain and Genome References
Gene Title histidine acid phosphatase
Ensembl R13H4.3
Entrez Gene 179621 Entrez gene
SwissProt P90949 EMBL-EBI
WormBase CE12804 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.10344.1.S1_AT similar to acid phosphatase, prostate isoform 1 cfa
DROSOPHILA_2:1640265_A_AT Acid phosphatase 1 dm
DROSGENOME1:150862_AT Acid phosphatase 1 dm
CHICKEN:GGAAFFX.7417.1.S1_AT similar to Prostatic acid phosphatase precursor gga
CHICKEN:GGAAFFX.7428.1.S1_AT similar to Prostatic acid phosphatase precursor gga
CHICKEN:GGAAFFX.7428.2.S1_S_AT similar to Prostatic acid phosphatase precursor gga
HG-FOCUS:204393_S_AT acid phosphatase, prostate hs
HG-U133_PLUS_2:204393_S_AT acid phosphatase, prostate hs
HG-U133A_2:204393_S_AT acid phosphatase, prostate hs
HG-U133A:204393_S_AT acid phosphatase, prostate hs
HG-U95AV2:617_AT acid phosphatase, prostate hs
HC-G110:617_AT acid phosphatase, prostate hs
HUGENEFL:M24902_AT acid phosphatase, prostate hs
U133_X3P:G6382063_3P_AT acid phosphatase, prostate hs
U133_X3P:HS.152298.0.A1_3P_AT acid phosphatase, prostate hs
HG-U133_PLUS_2:237030_AT acid phosphatase, prostate hs
HG-U133B:237030_AT acid phosphatase, prostate hs
HG-U95AV2:32200_AT acid phosphatase, prostate hs
HG-U95D:69994_AT acid phosphatase, prostate hs
HG-U95D:80874_AT acid phosphatase, prostate hs
HG-U133_PLUS_2:231711_AT Acid phosphatase, prostate hs
HG-U133B:231711_AT Acid phosphatase, prostate hs
HG-U133_PLUS_2:237077_AT Acid phosphatase, prostate hs
HG-U133B:237077_AT Acid phosphatase, prostate hs
HG-U133_PLUS_2:240953_AT Acid phosphatase, prostate hs
HG-U133B:240953_AT Acid phosphatase, prostate hs
HG-U95E:84099_AT Acid phosphatase, prostate hs
HG-U95E:84100_AT Acid phosphatase, prostate hs
HG-U95E:89335_AT Acid phosphatase, prostate hs
HG-U95E:89446_AT Acid phosphatase, prostate hs
HG-U95D:90158_AT Acid phosphatase, prostate hs
U133_X3P:HS.193481.0.A1_3P_AT Acid phosphatase, prostate hs
U133_X3P:HS.1852.1.A1_3P_AT Acid phosphatase, prostate hs
U133_X3P:HS.292776.0.A1_3P_AT Acid phosphatase, prostate hs
MOUSE430_2:1453943_A_AT acid phosphatase, prostate mm
MOE430A:1453943_A_AT acid phosphatase, prostate mm
MOUSE430A_2:1453943_A_AT acid phosphatase, prostate mm
MOUSE430_2:1419832_S_AT acid phosphatase, prostate mm
MOUSE430A_2:1419832_S_AT acid phosphatase, prostate mm
MOE430A:1419832_S_AT acid phosphatase, prostate mm
MU11KSUBB:MSA.3606.0_S_AT acid phosphatase, prostate mm
MG-U74AV2:103219_AT acid phosphatase, prostate mm
MG-U74CV2:133997_AT acid phosphatase, prostate mm
MOE430B:1441975_AT acid phosphatase, prostate mm
MOUSE430_2:1441975_AT acid phosphatase, prostate mm
RG-U34A:M32397_G_AT acid phosphatase, prostate rn
RG-U34A:M32397_AT acid phosphatase, prostate rn
RG-U34A:X74978EXON_AT acid phosphatase, prostate rn
RG-U34B:RC_AA851421_S_AT acid phosphatase, prostate rn
RAE230A:1368789_AT acid phosphatase, prostate rn
RAT230_2:1368789_AT acid phosphatase, prostate rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04655 Hypothetical protein R13H4.3 [Caenorhabditis elegans] ref|NP_505983.1| R13H4.3 [Caenorhabditis elegans] 0.0
blast CAE75285 Hypothetical protein CBG23253 [Caenorhabditis briggsae] 0.0
blast AAB37044 Hypothetical protein F52E1.8 [Caenorhabditis elegans] ref|NP_505167.1| F52E1.8 [Caenorhabditis elegans] 5.0E-57
blast AAB37044 Hypothetical protein F52E1.8 [Caenorhabditis elegans] ref|NP_505167.1| F52E1.8 [Caenorhabditis elegans] 6.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 4.0E-27
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 4.0E-27
Sequence
Target Sequence 
>C. ELEGANS:190987_AT
gcagacttcttcagtgaactttctcaaactacaggattcaaacactgttcatatatggat
attaatggattattcgatatacaaagagagttgattcataacatgactgcaaaacagcct
tattgggttacacaaacctggcctcaatatgacaatcgtacttcaatggacattataact
gaaatgaggaccgttcgaatgatgaatctatttaattcagaagagaaaggaaaacttgaa
ggaggctccgttctttacaattggattcaaaatgcaattgcagtttctgagagcagaaat
gatcagagaatgcttctttattcttcgcatgatggtgttcttcttgcacttctcaatgca
ttccgtgcttcaaatgagatgatggttccttatgcggctgcacttatcatgcatgtttat
tcagacaacggaaaattttattctgagctctactatcgaaatgagactacatcggatcca
tacagaattccgctttcccgatgcccggaaccttgtgaagtgtcgcaattggcagtggct
ttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGACTTCTTCAGTGAACTTTCTC 658 311 538 Antisense
GTTACACAAACCTGGCCTCAATATG 186 447 664 Antisense
GGAGGCTCCGTTCTTTACAATTGGA 189 515 778 Antisense
TCGCATGATGGTGTTCTTCTTGCAC 538 599 862 Antisense
CTTCTCAATGCATTCCGTGCTTCAA 435 221 886 Antisense
AGATGATGGTTCCTTATGCGGCTGC 463 65 914 Antisense
ATGCGGCTGCACTTATCATGCATGT 74 43 929 Antisense
ATTTTATTCTGAGCTCTACTATCGA 652 13 972 Antisense
GGATCCATACAGAATTCCGCTTTCC 653 511 1011 Antisense
GATGCCCGGAACCTTGTGAAGTGTC 697 403 1037 Antisense
GTCGCAATTGGCAGTGGCTTTTTCA 113 475 1059 Antisense
Sequence Source Affymetrix Proprietary Database