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[190984_at] Putative membrane protein

Description C49A1.2 /REP_DB=WormBase Gene ID /WP=CE15721 /TR=O17674 /GB=CAB05710.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Putative membrane protein
Cluster 6grp_total > 49      4grp_total > 56      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 7.2
(-2.9)
A 		21.7
(0.2)
A 		34.7
(3)
A 		6.5
(-3)
A 		28
B 39.3
(3)
A 		19.1
(-2.2)
A 		31.5
(1)
A 		15.9
(-3)
A 		23
C 9.9
(0.1)
A 		10
(0.2)
A 		14.6
(3)
A 		4.9
(-3)
A 		10
avr 18.8
(0.3) 		16.9
(-0.4) 		26.9
(3) 		9.1
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 39.6
(3)
P 		13.3
(-1.4)
A 		3.4
(-3)
A 		10.1
(-1.9)
A 		9.6
(-2)
A 		14.2
(-1.2)
A 		36
B 16.4
(-0.1)
A 		3.1
(-3)
A 		28.9
(2.6)
A 		22.5
(1.2)
A 		30.8
(3)
P 		24.5
(1.6)
M 		28
C 16.4
(-0.1)
A 		22.9
(1.3)
A 		2.6
(-3)
A 		31.1
(3)
A 		23.6
(1.4)
M 		29.3
(2.6)
P 		29
avr 24.1
(3) 		13.1
(-2.3) 		11.6
(-3) 		21.2
(1.6) 		21.3
(1.7) 		22.7
(2.3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.6
(-1.8)
A 		4.7
(-0.3)
A 		9.1
(3)
A 		1
(-3)
A 		8
B 12.5
(3)
A 		4.7
(-2.1)
A 		7.3
(-0.4)
A 		3.4
(-3)
A 		9
C 3.3
(0.5)
A 		2.9
(-0.1)
A 		5.1
(3)
A 		0.8
(-3)
A 		4
avr 6.1
(1.8) 		4.1
(-0.4) 		7.2
(3) 		1.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.3
(3)
P 		4.7
(0.6)
A 		0.7
(-3)
A 		2.6
(-1.3)
A 		2.9
(-1)
A 		3.5
(-0.5)
A 		7
B 5.7
(-0.5)
A 		1
(-3)
A 		7
(0.1)
A 		6
(-0.4)
A 		12.5
(3)
P 		9.1
(1.2)
M 		12
C 6.1
(0.6)
A 		7
(1.2)
A 		0.7
(-3)
A 		6.3
(0.7)
A 		7.6
(1.5)
M 		9.8
(3)
P 		9
avr 6.4
(1.4) 		4.2
(-1.3) 		2.8
(-3) 		5
(-0.3) 		7.7
(3) 		7.5
(2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190984_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2021
Sequence Type Exemplar sequence
Representative Public ID C49A1.2 NCBI
Target Description C49A1.2 /REP_DB=WormBase Gene ID /WP=CE15721 /TR=O17674 /GB=CAB05710.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Putative membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061079(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061079 NCBI Caenorhabditis elegans C49A1.2 (C49A1.2) mRNA, complete cds. 11/11 None
SNAP00000008653 ENSEMBL cdna:SNAP chromosome:CEL140:I:14217579:14220047:-1 9/11 None
GENEFINDER00000008670 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14217612:14220368:-1 9/11 None
C49A1.2 ENSEMBL cdna:known chromosome:CEL140:I:14217333:14220368:-1 gene:C49A1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14217263-14220299(-) 100.0 100.0
Public Domain and Genome References
Gene Title Putative membrane protein
Ensembl C49A1.2
Entrez Gene 183586 Entrez gene
SwissProt O17674 EMBL-EBI
WormBase CE15721 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05710 Hypothetical protein C49A1.2 [Caenorhabditis elegans] emb|CAB05029.1| Hypothetical protein C49A1.2 [Caenorhabditis elegans] ref|NP_493480.1| C49A1.2 [Caenorhabditis elegans] 0.0
blast CAB05710 Hypothetical protein C49A1.2 [Caenorhabditis elegans] emb|CAB05029.1| Hypothetical protein C49A1.2 [Caenorhabditis elegans] ref|NP_493480.1| C49A1.2 [Caenorhabditis elegans] 1.0E-151
blast CAB05027 Hypothetical protein ZK849.4 [Caenorhabditis elegans] ref|NP_493479.1| ZK849.4 [Caenorhabditis elegans] sp|O18303|YHS4_CAEEL Hypothetical protein ZK849.4 in chromosome I 2.0E-93
blast CAB05027 Hypothetical protein ZK849.4 [Caenorhabditis elegans] ref|NP_493479.1| ZK849.4 [Caenorhabditis elegans] sp|O18303|YHS4_CAEEL Hypothetical protein ZK849.4 in chromosome I 1.0E-91
blast CAB05028 Hypothetical protein ZK849.5 [Caenorhabditis elegans] ref|NP_493478.1| ZK849.5 [Caenorhabditis elegans] sp|O18304|YHS5_CAEEL Hypothetical protein ZK849.5 in chromosome I 3.0E-88
blast CAB05027 Hypothetical protein ZK849.4 [Caenorhabditis elegans] ref|NP_493479.1| ZK849.4 [Caenorhabditis elegans] sp|O18303|YHS4_CAEEL Hypothetical protein ZK849.4 in chromosome I 5.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493480.1 1 37-59
C49A1.2 1 37-59
GENEFINDER00000008670 4 36-58,73-92,238-260,275-294
Sequence
Target Sequence 
>C. ELEGANS:190984_AT
gtgaaactgacacttttgcgaaacggagacttcattccgattccattggcgtaccctcag
gctgtgtttcttgctgttcgattctacttcctggtctgtctgttcacaaggcaacacctc
gatttgagtgatcaccatgcgattgattacttcttcccactgctgacctcatttcaattc
atcttcattgtgggatggatgaaagtcgccgaaatcctgctgaatccgatgggagaggac
gacgatgatttcgagttgaactacgtcatcgataagaatttctacattggaatgacaatc
gtggattccaaggatatcgagcttacggaaaatgatgagattccggataaaattggtgaa
gactgtcttccattttatcgaaaggattgtgaagaggatgcgatcaaaaatcgagcactt
gttgtggacgataactggcgtgattacaatgagaatcattcggacacttcgagtatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAACTGACACTTTTGCGAAACG 703 481 694 Antisense
TCATTCCGATTCCATTGGCGTACCC 300 619 725 Antisense
TCAGGCTGTGTTTCTTGCTGTTCGA 394 623 750 Antisense
TGTTTCTTGCTGTTCGATTCTACTT 550 561 758 Antisense
CTGTCTGTTCACAAGGCAACACCTC 587 239 789 Antisense
GCAACACCTCGATTTGAGTGATCAC 56 319 804 Antisense
CCATGCGATTGATTACTTCTTCCCA 691 271 828 Antisense
GATTTCGAGTTGAACTACGTCATCG 175 429 940 Antisense
GGATTCCAAGGATATCGAGCTTACG 113 507 996 Antisense
GCACTTGTTGTGGACGATAACTGGC 706 315 1108 Antisense
GAATCATTCGGACACTTCGAGTATC 635 327 1146 Antisense
Sequence Source Affymetrix Proprietary Database