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[190982_at]

Description C32E8.2 /REP_DB=WormBase Gene ID /WP=CE08526 /TR=SW:P91128 /GB=AAB42322.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ribosomal protein L13
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 41      4grp_total > 17      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21317
1 2 3 4 range
A 27116.2
(-3)
P 		35917.1
(-0.2)
P 		33332.6
(-1)
P 		45710.1
(3)
P 		18594
B 26841.9
(-3)
P 		29006.4
(-1.3)
P 		29901.5
(-0.6)
P 		34359
(3)
P 		7517
C 24392.8
(-3)
P 		27768.8
(-1.9)
P 		26254.9
(-2.4)
P 		42377.6
(3)
P 		17985
avr 26117
(-3) 		30897.4
(-1) 		29829.7
(-1.5) 		40815.6
(3) 		14699

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10268
1 2 3 4 5 6 range
A 27365.8
(3)
P 		23266.1
(-0.1)
P 		25159.5
(1.4)
P 		26309.5
(2.2)
P 		19311.7
(-3)
P 		23837.2
(0.4)
P 		8054
B 22512.2
(1)
P 		23164.4
(1.6)
P 		24765.6
(3)
P 		22338.9
(0.9)
P 		19296.4
(-1.8)
P 		17962.2
(-3)
P 		6803
C 22397.8
(0.3)
P 		23702.4
(1.1)
P 		26681.5
(3)
P 		23131.1
(0.8)
P 		23239.3
(0.8)
P 		17097.4
(-3)
P 		9584
avr 24091.9
(1.5) 		23377.6
(0.8) 		25535.5
(3) 		23926.5
(1.4) 		20615.8
(-2) 		19632.3
(-3) 		5903
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3182
1 2 3 4 range
A 9873
(3)
P 		7796.6
(-0.9)
P 		8713.8
(0.8)
P 		6691.1
(-3)
P 		3182
B 8559.7
(3)
P 		7163.9
(-2.1)
P 		6928.9
(-3)
P 		7321.9
(-1.6)
P 		1631
C 8074.7
(-0.2)
P 		7983.7
(-0.5)
P 		9150.6
(3)
P 		7145.5
(-3)
P 		2005
avr 8835.8
(3) 		7648.1
(-1) 		8264.4
(1.1) 		7052.8
(-3) 		1783

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3650
1 2 3 4 5 6 range
A 5044.7
(-3)
P 		8274.6
(3)
P 		5479.2
(-2.2)
P 		6672.7
(0)
P 		5827.4
(-1.5)
P 		5803.6
(-1.6)
P 		3230
B 7833.2
(3)
P 		7710.5
(2.6)
P 		6013.8
(-2.7)
P 		5916.8
(-3)
P 		7839.9
(3)
P 		6698
(-0.6)
P 		1923
C 8301.9
(3)
P 		7232.3
(1.2)
P 		6790.9
(0.5)
P 		4651.7
(-3)
P 		7519.9
(1.7)
P 		5723.5
(-1.2)
P 		3650
avr 7059.9
(1) 		7739.1
(3) 		6094.6
(-2) 		5747.1
(-3) 		7062.4
(1) 		6075
(-2) 		1992
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.312
Sequence Type Exemplar sequence
Representative Public ID C32E8.2 NCBI
Target Description C32E8.2 /REP_DB=WormBase Gene ID /WP=CE08526 /TR=SW:P91128 /GB=AAB42322.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ribosomal protein L13
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025846 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-13) (rpl-13) mRNA, complete cds. 11/11 None
SNAP00000040652 ENSEMBL cdna:SNAP chromosome:CEL140:I:3788044:3788864:1 11/11 None
GENEFINDER00000040661 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3788044:3788864:1 11/11 None
C32E8.2a.3 ENSEMBL cdna:known chromosome:CEL140:I:3787590:3788912:1 gene:C32E8.2 11/11 None
C32E8.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:3788032:3788912:1 gene:C32E8.2 11/11 None
C32E8.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:3788038:3788912:1 gene:C32E8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001025847 6/11 Cross Hyb Matching Probes None
C32E8.2b.1 6/11 Cross Hyb Matching Probes None
C32E8.2b.2 6/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171949 2 1 NM_001025846 190982_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3788043-3788864(+) 100.0 100.0
Public Domain and Genome References
Ensembl C32E8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42322 Ribosomal protein, large subunit protein 13, isoform a [Caenorhabditis elegans] ref|NP_001021017.1| Ribosomal Protein, Large subunit family member (rpl-13) [Caenorhabditis elegans] sp|P91128|RL13_CAEEL 60S ribosomal protein L13 1.0E-102
blast CAE66665 Hypothetical protein CBG12003 [Caenorhabditis briggsae] 2.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR001380 EMBL-EBI Ribosomal protein L13e 2.9E-95
Sequence
Target Sequence 
>C. ELEGANS:190982_AT
catttccgcaagcactggcacaagcgcataaagacctggttcgaccagccagctcgcaaa
ctccgcagaagacagaaccgtcaagctaaggctgtcgaaatcgctcctcgcccagttgct
ggacttctcagatctgtcgtccgttgcccacagaagagatacaacaccaagactcgtctt
ggacgtggtttctctcttcaagagctcaaggccgccggaatctcccaggctcaggcccgc
accatcggaatcgccgttgatgtgagaagaaccaacaagaccgccgagggacttaaggcc
aacgccgatcgtctcaaggagtacaaagccaagcttatcctcttcccgaagaaggctagc
gcaccaaagaagggagacagctctgctgaggagctcaaggttgccgcccaacttcgcgga
gatgtccttccactttcccacaccatcaccttcgacgagccacgccaagttaccgacgcc
gaacgcaaggtcgagatcttcagacttctccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTCCGCAAGCACTGGCACAAGC 151 215 49 Antisense
AGCTCGCAAACTCCGCAGAAGACAG 258 81 99 Antisense
CTAAGGCTGTCGAAATCGCTCCTCG 96 227 134 Antisense
TGCTGGACTTCTCAGATCTGTCGTC 77 583 165 Antisense
TCGTCCGTTGCCCACAGAAGAGATA 447 605 185 Antisense
CTTGGACGTGGTTTCTCTCTTCAAG 341 215 226 Antisense
GCACCATCGGAATCGCCGTTGATGT 221 315 287 Antisense
GAGGGACTTAAGGCCAACGCCGATC 561 397 334 Antisense
TGCCGCCCAACTTCGCGGAGATGTC 176 585 450 Antisense
GTTACCGACGCCGAACGCAAGGTCG 590 437 517 Antisense
GGTCGAGATCTTCAGACTTCTCCGC 228 503 537 Antisense
Sequence Source Affymetrix Proprietary Database