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[190981_at] Transthyretin-like family

Description F46B3.4 /REP_DB=WormBase Gene ID /WP=CE18687 /TR=Q9XV18 /GB=CAB04401.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_total > 87      4grp_total > 42      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 4.8
(-3)
A 		52.7
(3)
M 		32.8
(0.5)
A 		43.8
(1.9)
A 		48
B 37.2
(-1)
A 		76.9
(3)
A 		42.9
(-0.4)
A 		17.5
(-3)
A 		59
C 23.6
(-3)
A 		41.6
(1.2)
A 		42.4
(1.4)
A 		49.4
(3)
A 		26
avr 21.9
(-3) 		57.1
(3) 		39.4
(-0) 		36.9
(-0.4) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 48.9
(-2.5)
A 		39.1
(-3)
A 		59.7
(-1.9)
A 		67.1
(-1.6)
P 		83
(-0.8)
P 		156.4
(3)
P 		117
B 48.3
(-2.1)
A 		27.2
(-3)
A 		27.3
(-3)
A 		49.1
(-2.1)
A 		86.2
(-0.4)
P 		165.6
(3)
P 		138
C 35.6
(-1.9)
A 		38.5
(-1.8)
A 		4.9
(-3)
A 		52.4
(-1.3)
A 		93.5
(0.2)
P 		173.3
(3)
P 		168
avr 44.3
(-2.4) 		34.9
(-2.8) 		30.6
(-3) 		56.2
(-1.9) 		87.6
(-0.5) 		165.1
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.8
(-3)
A 		11.4
(3)
M 		8.6
(1.3)
A 		6.4
(-0.1)
A 		10
B 11.9
(0.2)
A 		19
(3)
A 		9.9
(-0.6)
A 		3.7
(-3)
A 		15
C 7.8
(-3)
A 		12
(0.6)
A 		14.8
(3)
A 		8.3
(-2.6)
A 		7
avr 7.2
(-2.2) 		14.1
(3) 		11.1
(0.8) 		6.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 9
(-3)
A 		13.9
(-2)
A 		13
(-2.2)
A 		17
(-1.4)
P 		25.1
(0.3)
P 		38.1
(3)
P 		29
B 16.8
(-1.9)
A 		9
(-2.7)
A 		6.6
(-3)
A 		13
(-2.3)
A 		35
(0.1)
P 		61.8
(3)
P 		55
C 13.2
(-1.7)
A 		11.7
(-1.9)
A 		1.2
(-3)
A 		10.5
(-2)
A 		30.3
(0.1)
P 		58
(3)
P 		57
avr 13
(-2.2) 		11.5
(-2.4) 		6.9
(-3) 		13.5
(-2.1) 		30.1
(0) 		52.6
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14022
Sequence Type Exemplar sequence
Representative Public ID F46B3.4 NCBI
Target Description F46B3.4 /REP_DB=WormBase Gene ID /WP=CE18687 /TR=Q9XV18 /GB=CAB04401.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075575 NCBI Caenorhabditis elegans F46B3.4 (F46B3.4) mRNA, complete cds. 11/11 None
F46B3.4 ENSEMBL cdna:known chromosome:CEL140:V:20605855:20606571:-1 gene:F46B3.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039758 6/11 Cross Hyb Matching Probes None
GENEFINDER00000039777 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20605854-20606520(-) 99.18 99.18
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl F46B3.4
Entrez Gene 180348 Entrez gene
SwissProt Q9XV18 EMBL-EBI
WormBase CE18687 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04401 Hypothetical protein F46B3.4 [Caenorhabditis elegans] ref|NP_507976.1| F46B3.4 [Caenorhabditis elegans] 3.0E-97
blast CAE61674 Hypothetical protein CBG05616 [Caenorhabditis briggsae] 5.0E-12
blast AAB52282 Hypothetical protein F19F10.4 [Caenorhabditis elegans] ref|NP_504946.2| F19F10.4 [Caenorhabditis elegans] 3.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.3E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507976.1 1 4-26
F46B3.4 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:190981_AT
tttctgtgtcttttggctccaaactactgttatgcagcgtgtgcttctgttcacgtaaaa
ggccagctaatgtgcagaggaagaccatatgttggggagatggttcagatttgggagccc
aaaattttcgacgaaatgtggtcggatcaaaaaacaggagtcgatgggagattcgagatg
gcgactaacgggaatgatgtgactctagtcgacattccattgctgaattttggattcaaa
ccgtatctatggatcaataatttttgcggaacagaagtgatgaatggggagagatgtacc
aagaatcttgtaaagattcccattccggaatggtatgtcaatccatgtcgaccggatgtt
catatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTGTGTCTTTTGGCTCCAAACT 692 669 34 Antisense
GCTCCAAACTACTGTTATGCAGCGT 670 297 49 Antisense
TTATGCAGCGTGTGCTTCTGTTCAC 458 679 63 Antisense
GTGCTTCTGTTCACGTAAAAGGCCA 526 477 74 Antisense
AGGCCAGCTAATGTGCAGAGGAAGA 143 49 93 Antisense
ACGGGAATGATGTGACTCTAGTCGA 335 95 221 Antisense
ACTCTAGTCGACATTCCATTGCTGA 318 99 235 Antisense
GGATTCAAACCGTATCTATGGATCA 311 509 265 Antisense
ATCTTGTAAAGATTCCCATTCCGGA 259 31 338 Antisense
GGTATGTCAATCCATGTCGACCGGA 316 505 365 Antisense
TCCATGTCGACCGGATGTTCATATT 173 591 375 Antisense
Sequence Source Affymetrix Proprietary Database