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[190980_at] DNA repair protein (REV1)

Description ZK675.2 /REP_DB=WormBase Gene ID /WP=CE01721 /TR=Q09615 /GB=CAA86844.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=DNA repair protein (REV1)
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 74      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 73      6grp_total > 65      4grp_total > 38      6grp_cgc > 66      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 500.4
(3)
P 		247.9
(-1.9)
P 		191.3
(-3)
P 		291.7
(-1.1)
P 		309
B 525.2
(3)
P 		292.5
(-0.7)
P 		147.7
(-3)
P 		319.5
(-0.3)
P 		378
C 495.6
(3)
P 		240.4
(-2.8)
P 		230.9
(-3)
P 		261.6
(-2.3)
P 		265
avr 507.1
(3) 		260.3
(-1.7) 		190
(-3) 		290.9
(-1.1) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 581.9
(1)
P 		525.1
(-2.9)
P 		585.4
(1.2)
P 		611.9
(3)
P 		560.7
(-0.5)
P 		523.6
(-3)
P 		88
B 507.2
(-1.3)
P 		516
(-1.1)
P 		552.8
(0.1)
P 		559.5
(0.4)
P 		456.5
(-3)
P 		640.1
(3)
P 		184
C 349.7
(-3)
P 		646.7
(3)
P 		596.7
(2)
P 		631.3
(2.7)
P 		370.5
(-2.6)
P 		602.7
(2.1)
P 		297
avr 479.6
(-2.3) 		562.6
(1.3) 		578.3
(2) 		600.9
(3) 		462.6
(-3) 		588.8
(2.5) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 182.2
(3)
P 		53.8
(-2.5)
P 		50
(-2.7)
P 		42.7
(-3)
P 		140
B 167.5
(3)
P 		72.2
(-1.3)
P 		34.2
(-3)
P 		68.1
(-1.5)
P 		133
C 164.1
(3)
P 		69.1
(-1.8)
P 		80.5
(-1.2)
P 		44.1
(-3)
P 		120
avr 171.3
(3) 		65
(-2.3) 		54.9
(-2.8) 		51.6
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 107.3
(-3)
P 		186.8
(3)
P 		127.5
(-1.5)
P 		155.2
(0.6)
P 		169.2
(1.7)
P 		127.5
(-1.5)
P 		80
B 176.5
(-0.6)
P 		171.8
(-0.8)
P 		134.2
(-3)
P 		148.2
(-2.2)
P 		185.5
(-0.1)
P 		238.7
(3)
P 		105
C 129.6
(-2.3)
P 		197.3
(2.7)
P 		151.9
(-0.7)
P 		127
(-2.5)
P 		119.9
(-3)
P 		201.7
(3)
P 		82
avr 137.8
(-3) 		185.3
(2.5) 		137.9
(-3) 		143.5
(-2.3) 		158.2
(-0.6) 		189.3
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4928
Sequence Type Exemplar sequence
Representative Public ID ZK675.2 NCBI
Target Description ZK675.2 /REP_DB=WormBase Gene ID /WP=CE01721 /TR=Q09615 /GB=CAA86844.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=DNA repair protein (REV1)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063262 NCBI Caenorhabditis elegans REV1 (translesion DNA polymerase) homolog family member (rev-1) (rev-1) mRNA, complete cds. 11/11 None
SNAP00000025889 ENSEMBL cdna:SNAP chromosome:CEL140:II:7900569:7904483:1 11/11 None
GENEFINDER00000025896 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7900569:7904483:1 11/11 None
ZK675.2 ENSEMBL cdna:known chromosome:CEL140:II:7900569:7904555:1 gene:ZK675.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7900565-7904480(+) 100.0 100.0
Public Domain and Genome References
Gene Title DNA repair protein (REV1)
Gene Symbol rev-1
Ensembl ZK675.2
Entrez Gene 174275 Entrez gene
SwissProt Q09615 EMBL-EBI
WormBase CE01721 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86844 Hypothetical protein ZK675.2 [Caenorhabditis elegans] ref|NP_495663.1| REV1 (translesion DNA polymerase) homolog family member (rev-1) [Caenorhabditis elegans] 0.0
blast CAE59823 Hypothetical protein CBG03293 [Caenorhabditis briggsae] 0.0
blast AAF47401 CG12189-PA [Drosophila melanogaster] ref|NP_612047.1| CG12189-PA [Drosophila melanogaster] dbj|BAB15801.1| dREV1 [Drosophila melanogaster] 5.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR001357 EMBL-EBI BRCT 7.1E-7
Pfam IPR001126 EMBL-EBI UMUC-like DNA-repair protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190980_AT
gaacctgtgataattccagctgtgactgaagatctggaagtgcaaagcatacctcgtcaa
attaattttagagtggcaaatgacatagatattcctgaaattgtaaaatccacacttctc
aatggacgatctgacaacaacctcgaattggaagatttggaagatgatggattagttgaa
aatcgtctggccgaattggaatgtattattcaaaatgagccaaccaaggagagtgttacg
aacttacaggaaatgctttcaacgttgctaaactatggaaaactttccgcattcgagact
gtattcagaaagtttgaagagatttcgatggattctagtagatgcgacactgcttggttt
tcagtattccatttgatggtaccattcatcgaagaagaatcaaaagatctgcttgaattt
cccatagctaccactcgaaatttgggagctatgattgccagcaacactgataacacatca
attagttcaccagagccatttgttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCTGTGATAATTCCAGCTGTGA 57 347 2551 Antisense
AAGTGCAAAGCATACCTCGTCAAAT 288 159 2588 Antisense
GTAAAATCCACACTTCTCAATGGAC 670 459 2653 Antisense
GGACGATCTGACAACAACCTCGAAT 413 523 2674 Antisense
AATGCTTTCAACGTTGCTAAACTAT 672 165 2802 Antisense
AAACTTTCCGCATTCGAGACTGTAT 137 129 2830 Antisense
TAGATGCGACACTGCTTGGTTTTCA 695 651 2889 Antisense
AGATCTGCTTGAATTTCCCATAGCT 127 67 2955 Antisense
TCCCATAGCTACCACTCGAAATTTG 407 597 2970 Antisense
TGGGAGCTATGATTGCCAGCAACAC 243 553 2993 Antisense
TAGTTCACCAGAGCCATTTGTTCCA 188 653 3033 Antisense
Sequence Source Affymetrix Proprietary Database