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[190979_at] glutathione S-transferase

Description F37B1.2 /REP_DB=WormBase Gene ID /WP=CE09989 /TR=Q93695 /GB=CAB02288.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 4grp_high_8_8 > 04      6grp_total > 18      4grp_total > 04      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 838
1 2 3 4 range
A 366.3
(-0.8)
P 		135
(-3)
A 		189.8
(-2.5)
P 		770
(3)
P 		635
B 345.2
(-1.5)
P 		134.5
(-3)
A 		181.8
(-2.7)
P 		972.7
(3)
P 		838
C 325.7
(-1.3)
P 		160.3
(-3)
P 		184.3
(-2.8)
P 		759
(3)
P 		599
avr 345.7
(-1.2) 		143.3
(-3) 		185.3
(-2.6) 		833.9
(3) 		691

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 687
1 2 3 4 5 6 range
A 505.8
(3)
P 		136.6
(-1.8)
P 		90.2
(-2.4)
M 		42.5
(-3)
A 		71.1
(-2.6)
A 		74.4
(-2.6)
A 		463
B 567.9
(3)
P 		168.3
(-1.5)
P 		80.2
(-2.4)
M 		39.6
(-2.9)
A 		30.4
(-3)
A 		89.3
(-2.3)
A 		538
C 699.2
(3)
P 		128.8
(-2)
P 		39.8
(-2.8)
A 		11.8
(-3)
A 		39.5
(-2.8)
A 		100.3
(-2.2)
A 		687
avr 591
(3) 		144.6
(-1.8) 		70.1
(-2.6) 		31.3
(-3) 		47
(-2.8) 		88
(-2.4) 		560
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 133.4
(3)
P 		29.3
(-3)
A 		49.6
(-1.8)
P 		112.7
(1.8)
P 		104
B 110.1
(-0.3)
P 		33.2
(-3)
A 		42.1
(-2.7)
P 		207.3
(3)
P 		174
C 107.8
(1.5)
P 		46.1
(-3)
P 		64.2
(-1.7)
P 		128
(3)
P 		82
avr 117.1
(1.3) 		36.2
(-3) 		52
(-2.2) 		149.3
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 93.2
(3)
P 		48.6
(-0.2)
P 		19.7
(-2.4)
M 		10.8
(-3)
A 		21.5
(-2.2)
A 		18.1
(-2.5)
A 		82
B 197.6
(3)
P 		56
(-1.5)
P 		19.5
(-2.7)
M 		10.5
(-3)
A 		12.4
(-2.9)
A 		33.3
(-2.3)
A 		187
C 259.1
(3)
P 		39.3
(-2.1)
P 		10.1
(-2.8)
A 		2.4
(-3)
A 		12.8
(-2.8)
A 		33.6
(-2.3)
A 		257
avr 183.3
(3) 		48
(-1.6) 		16.4
(-2.7) 		7.9
(-3) 		15.6
(-2.7) 		28.3
(-2.3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190979_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3584
Sequence Type Exemplar sequence
Representative Public ID F37B1.2 NCBI
Target Description F37B1.2 /REP_DB=WormBase Gene ID /WP=CE09989 /TR=Q93695 /GB=CAB02288.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064461 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-12) (gst-12) mRNA, complete cds. 11/11 None
SNAP00000041643 ENSEMBL cdna:SNAP chromosome:CEL140:II:13616658:13617806:-1 11/11 None
GENEFINDER00000041655 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13616658:13617806:-1 11/11 None
F37B1.2 ENSEMBL cdna:known chromosome:CEL140:II:13616658:13617806:-1 gene:F37B1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13616654-13617803(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-12
Ensembl F37B1.2
Entrez Gene 185408 Entrez gene
SwissProt Q93695 EMBL-EBI
WormBase CE09989 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02288 Hypothetical protein F37B1.2 [Caenorhabditis elegans] ref|NP_496862.1| Glutathione S-Transferase family member (gst-12) [Caenorhabditis elegans] 1.0E-115
blast CAB02289 Hypothetical protein F37B1.3 [Caenorhabditis elegans] ref|NP_496861.1| Glutathione S-Transferase family member (gst-14) [Caenorhabditis elegans] 1.0E-93
blast CAE73252 Hypothetical protein CBG20668 [Caenorhabditis briggsae] 4.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.1E-8
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:190979_AT
cccgccagacttttatttcatcttgccggagttccgtttgaggatgaacgactgactttt
ggagatggaagctgggagaagctgaaggacaaaaccccaatgggtcaaatgcctgtccta
aacgtcgacggatttgaaatcccccaatctgctgccatcactcgctaccttgctagaaaa
ttcgggttcgctggaaaaactcctgaagaagaagcttgggtggacgccgtcgtcgatcaa
ttcaaggatttttttggagaattcagaaaactaattattgctcagcgagccggaaaatca
gtggaagaaattgaaaagctcaccaaggaagttatcaatccagctgtaagctcgttcttc
aaaattctcaatggccttctggaaaagagcaagtcaggatatctcatcggggattcgatc
acctttgcggatcttttcatcgctgaagatatgcaatcccttaaaaactttggattcctg
aatgctacggagcaaccaaaaattgcagctcatctcgaaaaagtgtactcccatccgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGCCAGACTTTTATTTCATCTTG 504 261 61 Antisense
ACCCCAATGGGTCAAATGCCTGTCC 449 85 154 Antisense
ATGCCTGTCCTAAACGTCGACGGAT 117 27 169 Antisense
ACGGATTTGAAATCCCCCAATCTGC 487 95 188 Antisense
AATCCAGCTGTAAGCTCGTTCTTCA 612 167 397 Antisense
TCAAAATTCTCAATGGCCTTCTGGA 554 629 419 Antisense
GTCAGGATATCTCATCGGGGATTCG 188 465 453 Antisense
GGATTCGATCACCTTTGCGGATCTT 371 509 471 Antisense
TTTGCGGATCTTTTCATCGCTGAAG 309 669 484 Antisense
TGGATTCCTGAATGCTACGGAGCAA 250 551 531 Antisense
CGAAAAAGTGTACTCCCATCCGAAG 237 243 576 Antisense
Sequence Source Affymetrix Proprietary Database