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[190975_at] glutathione S-transferase

Description F37B1.1 /REP_DB=WormBase Gene ID /WP=CE17789 /TR=Q93694 /GB=CAB02295.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_high1_10_10 > 06      6grp_total > 06      4grp_total > 52      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 942
1 2 3 4 range
A 974.2
(2.5)
P 		1058
(3)
P 		909.8
(2)
P 		125.5
(-3)
A 		933
B 818.2
(1.6)
P 		1015.3
(3)
P 		731.3
(1)
P 		171.9
(-3)
A 		843
C 713.9
(0.9)
P 		1043
(3)
P 		880.2
(1.9)
P 		115.6
(-3)
A 		927
avr 835.4
(1.6) 		1038.8
(3) 		840.4
(1.7) 		137.7
(-3) 		901

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1134
1 2 3 4 5 6 range
A 1139.7
(3)
P 		590.8
(-0.2)
P 		534.7
(-0.6)
P 		422.1
(-1.2)
P 		227.6
(-2.4)
P 		124.5
(-3)
A 		1015
B 1258.2
(3)
P 		663.8
(-0.2)
P 		723.6
(0.2)
P 		449.4
(-1.3)
P 		326.5
(-2)
P 		129.1
(-3)
A 		1129
C 1158.1
(3)
P 		790.7
(0.7)
P 		558.2
(-0.7)
P 		488.2
(-1.1)
P 		225.3
(-2.8)
P 		186.8
(-3)
P 		971
avr 1185.3
(3) 		681.8
(0.1) 		605.5
(-0.3) 		453.2
(-1.2) 		259.8
(-2.3) 		146.8
(-3) 		1039
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 354.7
(3)
P 		229.7
(0.8)
P 		237.8
(0.9)
P 		18.4
(-3)
A 		336
B 260.9
(3)
P 		250.7
(2.7)
P 		169.5
(0.6)
P 		36.6
(-3)
A 		224
C 236.3
(1.5)
P 		299.9
(2.9)
P 		306.8
(3)
P 		19.5
(-3)
A 		287
avr 284
(3) 		260.1
(2.4) 		238
(1.9) 		24.8
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 210.1
(3)
P 		210.1
(3)
P 		116.4
(-0.1)
P 		107
(-0.4)
P 		68.7
(-1.7)
P 		30.3
(-3)
A 		180
B 437.8
(3)
P 		220.9
(-0.3)
P 		175.7
(-1)
P 		119
(-1.9)
P 		132.6
(-1.7)
P 		48.2
(-3)
A 		390
C 429.2
(3)
P 		241.3
(-0.1)
P 		142.1
(-1.7)
P 		98.2
(-2.4)
P 		72.9
(-2.8)
P 		62.5
(-3)
P 		367
avr 359
(3) 		224.1
(0.4) 		144.7
(-1.1) 		108.1
(-1.8) 		91.4
(-2.1) 		47
(-3) 		312
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3176
Sequence Type Exemplar sequence
Representative Public ID F37B1.1 NCBI
Target Description F37B1.1 /REP_DB=WormBase Gene ID /WP=CE17789 /TR=Q93694 /GB=CAB02295.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064458(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064458 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-24) (gst-24) mRNA, complete cds. 11/11 None
SNAP00000041640 ENSEMBL cdna:SNAP chromosome:CEL140:II:13610376:13611190:-1 11/11 None
GENEFINDER00000041653 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13610376:13611190:-1 10/11 None
F37B1.1 ENSEMBL cdna:known chromosome:CEL140:II:13610376:13611190:-1 gene:F37B1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13610372-13611187(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-24
Ensembl F37B1.1
Entrez Gene 185407 Entrez gene
SwissProt Q93694 EMBL-EBI
WormBase CE17789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02295 Hypothetical protein F37B1.1 [Caenorhabditis elegans] ref|NP_496859.1| Glutathione S-Transferase family member (gst-24) [Caenorhabditis elegans] 1.0E-117
blast CAB02295 Hypothetical protein F37B1.1 [Caenorhabditis elegans] ref|NP_496859.1| Glutathione S-Transferase family member (gst-24) [Caenorhabditis elegans] 1.0E-110
blast CAE73254 Hypothetical protein CBG20670 [Caenorhabditis briggsae] 9.0E-97
blast CAE73254 Hypothetical protein CBG20670 [Caenorhabditis briggsae] 2.0E-90
blast CAB61107 Hypothetical protein Y53F4B.33 [Caenorhabditis elegans] ref|NP_497119.1| Glutathione S-Transferase family member (gst-39) [Caenorhabditis elegans] 8.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.2E-9
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 6.9E-21
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.2E-9
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.1E-18
Sequence
Target Sequence 
>C. ELEGANS:190975_AT
caagctctactatttcaaccttcgtggatgggctgagccggctcggcagctcttcaagct
ggctcacgtcgagtttgaggatgttcgtattgagaatggaactccagagtggggagcgtt
gaagccaaaaaccccatttggtcagctcccattcctctcagtcgatggcttcgaaatccc
ccaatccgctgcaattctccgctaccttgccaaaaaattcggctacgctggaaaaacatc
agaggaagaagcgtgggtggatgcaatcgtagatcaattcaaagacttcgtcaccccact
acgccaactcatcatggctcaaagatccggaaatgcggaggaaatcgagcgaatccaaaa
ggaggtcttcgcgccggcccgggatacattcttcaaaattcttaatggaattcttgagaa
gagcaagtcaggattcctagtcggagatggtgtaacttgggctgatctggtgatagctga
tattttgacaactatggagatgctgggagtgtttgataagcacggagaggagcagaagct
tgcagcgctccgtgagaaggtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCTCTACTATTTCAACCTTCGT 55 187 24 Antisense
TTTCAACCTTCGTGGATGGGCTGAG 169 603 36 Antisense
TCAAGCTGGCTCACGTCGAGTTTGA 564 631 77 Antisense
GGAGCGTTGAAGCCAAAAACCCCAT 219 511 136 Antisense
ATTCCTCTCAGTCGATGGCTTCGAA 237 9 174 Antisense
AGAAGCGTGGGTGGATGCAATCGTA 416 73 270 Antisense
CAATTCAAAGACTTCGTCACCCCAC 701 179 298 Antisense
CCCACTACGCCAACTCATCATGGCT 170 257 318 Antisense
GCCCGGGATACATTCTTCAAAATTC 510 285 400 Antisense
GGTGTAACTTGGGCTGATCTGGTGA 327 499 472 Antisense
CTTGCAGCGCTCCGTGAGAAGGTTA 555 217 562 Antisense
Sequence Source Affymetrix Proprietary Database