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[190974_at]

Description Y39B6B.AA /REP_DB=WormBase Gene ID /WP=CE21670 /GEN=tsp-13 /TR=Q9NET3 /GB=CAB60932.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=tetraspanin
Cluster 6grp_high1_10_10 > 71      6grp_total > 81      4grp_total > 04      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 167.6
(1.1)
P 		117.7
(-3)
A 		176.4
(1.8)
A 		190.5
(3)
A 		73
B 197
(-0.6)
P 		178.8
(-1.4)
M 		141.1
(-3)
A 		282.5
(3)
P 		141
C 177.7
(-1.6)
A 		139.5
(-2.4)
A 		115.1
(-3)
P 		374.5
(3)
P 		259
avr 180.8
(-1.4) 		145.3
(-3) 		144.2
(-3) 		282.5
(3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 164.9
(-2.8)
P 		162.3
(-3)
A 		208.2
(0.5)
A 		200.4
(-0.1)
M 		242
(3)
P 		215.6
(1)
P 		80
B 241.8
(3)
P 		178.2
(-1.8)
P 		228.1
(2)
P 		202.3
(0)
P 		237.3
(2.7)
P 		162.2
(-3)
P 		80
C 185.8
(-2.3)
P 		219.8
(-0.8)
P 		171.4
(-3)
M 		302.5
(3)
P 		189.8
(-2.2)
P 		182.5
(-2.5)
P 		131
avr 197.5
(-1.7) 		186.8
(-3) 		202.6
(-1) 		235.1
(3) 		223
(1.5) 		186.8
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 61
(3)
P 		25.6
(-3)
A 		46.1
(0.5)
A 		27.9
(-2.6)
A 		35
B 62.8
(3)
P 		44.2
(-0.7)
M 		32.7
(-3)
A 		60.2
(2.5)
P 		30
C 58.8
(1.9)
A 		40.1
(-3)
A 		40.1
(-3)
P 		63.1
(3)
P 		23
avr 60.9
(3) 		36.6
(-3) 		39.6
(-2.3) 		50.4
(0.4) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 30.4
(-3)
P 		57.7
(0.8)
A 		45.3
(-0.9)
A 		50.8
(-0.1)
M 		73
(3)
P 		52.5
(0.1)
P 		43
B 84.1
(1.3)
P 		59.3
(-2.2)
P 		55.4
(-2.7)
P 		53.6
(-3)
P 		96.4
(3)
P 		60.5
(-2)
P 		43
C 68.9
(3)
P 		67.1
(2.6)
P 		43.6
(-3)
M 		60.8
(1.1)
P 		61.4
(1.2)
P 		61.1
(1.2)
P 		25
avr 61.1
(-0.3) 		61.4
(-0.2) 		48.1
(-3) 		55.1
(-1.5) 		76.9
(3) 		58
(-0.9) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190974_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19452
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.AA NCBI
Target Description Y39B6B.AA /REP_DB=WormBase Gene ID /WP=CE21670 /GEN=tsp-13 /TR=Q9NET3 /GB=CAB60932.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=tetraspanin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171602 NCBI Caenorhabditis elegans TetraSPanin family member (tsp-13) (tsp-13) mRNA, complete cds. 11/11 None
GENEFINDER00000030724 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19156695:19160208:1 11/11 None
Y39B6A.6 ENSEMBL cdna:known chromosome:CEL140:V:19156695:19160208:1 gene:Y39B6A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19156694-19160208(+) 98.03 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tsp-13
Ensembl Y39B6A.6
Entrez Gene 189737 Entrez gene
SwissProt Q9NET3 EMBL-EBI
WormBase CE21670 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC51071 Hypothetical protein Y39B6A.6 [Caenorhabditis elegans] ref|NP_741692.1| TetraSPanin family member (tsp-13) [Caenorhabditis elegans] 1.0E-175
blast CAE73146 Hypothetical protein CBG20537 [Caenorhabditis briggsae] 1.0E-145
blast CAB07307 B0413.2 [Caenorhabditis elegans] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR000301 EMBL-EBI CD9/CD37/CD63 antigen 7.5E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741692.1 4 59-81,109-131,143-165,249-271
Y39B6A.6 4 59-81,109-131,143-165,249-271
GENEFINDER00000030724 4 59-81,109-131,143-165,249-271
Sequence
Target Sequence 
>C. ELEGANS:190974_AT
aaccggaagatctcgtccattccttattatctactccatggtagtttttctattgctggt
ggcgacattaagctgtggtatatatcttttgtacaaaaaggacgggctcgacgtggaatt
atccgacgccttaaactacatggttcagcactactatcagggtcctggagttgttcagga
gtctctggaccacttgcaaaccgcttttaggtgttgtggaaacgccggttgctccgattt
ccgagtttttcgacaggatattcccagatcctgtgatatacgttgtgatggatgccattt
tcgaataatgatagctcttcgaattggcttctcggtcaccttaattgtattttctgctgt
tgtattgtgccaagtactcactatttgctttgcgttgtattttgtatttatgagggagaa
ggaagttaaaattatctacgtagaacctccacatcgccgtcatagtcaccgattaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCGGAAGATCTCGTCCATTCCTT 337 145 417 Antisense
ATTCCTTATTATCTACTCCATGGTA 258 7 435 Antisense
GTAGTTTTTCTATTGCTGGTGGCGA 365 455 457 Antisense
GAATTATCCGACGCCTTAAACTACA 94 325 532 Antisense
TGGTTCAGCACTACTATCAGGGTCC 459 551 557 Antisense
GACCACTTGCAAACCGCTTTTAGGT 538 381 604 Antisense
TTGCTCCGATTTCCGAGTTTTTCGA 500 699 645 Antisense
TGGCTTCTCGGTCACCTTAATTGTA 524 541 741 Antisense
AGTACTCACTATTTGCTTTGCGTTG 322 61 789 Antisense
TTATCTACGTAGAACCTCCACATCG 671 679 848 Antisense
CGCCGTCATAGTCACCGATTAACAC 280 255 871 Antisense
Sequence Source Affymetrix Proprietary Database