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[190972_at] diamine acetyltransferase

Description D2023.4 /REP_DB=WormBase Gene ID /WP=CE09074 /TR=O17731 /GB=CAB02871.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=diamine acetyltransferase
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 54      4grp_highest_8_8 > 03      4grp_high_8_8 > 38      6grp_highest_nonorm > 74      6grp_total > 55      4grp_total > 41      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 555.5
(-3)
P 		851
(2.4)
P 		884.3
(3)
P 		766.7
(0.9)
P 		329
B 467.3
(-3)
P 		965.6
(3)
P 		897.4
(2.2)
P 		765.1
(0.6)
P 		498
C 571.5
(-3)
P 		916.8
(1.7)
P 		1015.3
(3)
P 		748.3
(-0.6)
P 		444
avr 531.4
(-3) 		911.1
(2.7) 		932.3
(3) 		760
(0.4) 		401

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 528
1 2 3 4 5 6 range
A 590.4
(-3)
P 		873.5
(0.3)
P 		1110.2
(3)
P 		881.7
(0.4)
P 		590.5
(-3)
P 		736.5
(-1.3)
P 		520
B 726.4
(-0.2)
P 		895.4
(3)
P 		761.2
(0.4)
P 		694.9
(-0.8)
P 		582.5
(-3)
P 		844
(2)
P 		313
C 718.5
(-1)
P 		881.3
(1.6)
P 		746.3
(-0.6)
P 		772.2
(-0.2)
P 		597.3
(-3)
P 		968.7
(3)
P 		371
avr 678.4
(-1.2) 		883.4
(3) 		872.6
(2.8) 		782.9
(0.9) 		590.1
(-3) 		849.7
(2.3) 		293
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 202.3
(1.5)
P 		184.7
(0.7)
P 		231.2
(3)
P 		112.2
(-3)
P 		119
B 149
(-3)
P 		238.5
(3)
P 		207.9
(0.9)
P 		163
(-2.1)
P 		90
C 189.2
(-1.3)
P 		263.6
(0.6)
P 		353.9
(3)
P 		126.2
(-3)
P 		228
avr 180.2
(-0.9) 		228.9
(1.4) 		264.3
(3) 		133.8
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 108.8
(-3)
P 		310.7
(3)
P 		241.8
(1)
P 		223.6
(0.4)
P 		178.2
(-0.9)
P 		179.3
(-0.9)
P 		202
B 252.7
(0.2)
P 		298.1
(2.2)
P 		184.8
(-3)
P 		184.1
(-3)
P 		236.7
(-0.6)
P 		314.7
(3)
P 		131
C 266.3
(0.9)
P 		268.9
(1)
P 		190
(-1.8)
P 		155.3
(-3)
P 		193.3
(-1.7)
P 		324.3
(3)
P 		169
avr 209.3
(-1.8) 		292.6
(3) 		205.5
(-2) 		187.7
(-3) 		202.7
(-2.1) 		272.8
(1.9) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13873
Sequence Type Exemplar sequence
Representative Public ID D2023.4 NCBI
Target Description D2023.4 /REP_DB=WormBase Gene ID /WP=CE09074 /TR=O17731 /GB=CAB02871.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=diamine acetyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073577 NCBI Caenorhabditis elegans D2023.4 (D2023.4) mRNA, complete cds. 11/11 None
SNAP00000024927 ENSEMBL cdna:SNAP chromosome:CEL140:V:11827687:11828307:-1 11/11 None
GENEFINDER00000024936 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11826996:11828307:-1 11/11 None
D2023.4.1 ENSEMBL cdna:known chromosome:CEL140:V:11827617:11828352:-1 gene:D2023.4 11/11 None
D2023.4.2 ENSEMBL cdna:known chromosome:CEL140:V:11827641:11828350:-1 gene:D2023.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11827686-11828307(-) 100.0 100.0
Public Domain and Genome References
Gene Title diamine acetyltransferase
Ensembl D2023.4
Entrez Gene 183946 Entrez gene
SwissProt O17731 EMBL-EBI
WormBase CE09074 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:11996_AT GCN5-related N-acetyltransferase (GNAT) family protein at
ATH1-121501:266189_AT GCN5-related N-acetyltransferase (GNAT) family protein at
CANINE:1583505_S_AT similar to polyamine N-acetyltransferase cfa
CANINE:1602496_X_AT similar to polyamine N-acetyltransferase cfa
CANINE:1596784_AT similar to polyamine N-acetyltransferase cfa
CANINE_2:CFA.11437.1.A1_AT similar to polyamine N-acetyltransferase cfa
CANINE_2:CFA.14290.1.A1_AT similar to polyamine N-acetyltransferase cfa
CANINE_2:CFAAFFX.25497.1.S1_S_AT similar to polyamine N-acetyltransferase cfa
DROSOPHILA_2:1628896_A_AT dm
DROSGENOME1:149940_AT dm
HU35KSUBA:AA070090_AT spermidine/spermine N1-acetyltransferase 2 hs
HU35KSUBA:RC_AA070091_AT spermidine/spermine N1-acetyltransferase 2 hs
U133_X3P:HS.10846.0.A1_3P_AT spermidine/spermine N1-acetyltransferase 2 hs
HG-U133_PLUS_2:225272_AT spermidine/spermine N1-acetyltransferase 2 hs
HG-U133B:225272_AT spermidine/spermine N1-acetyltransferase 2 hs
HG-U95B:48088_AT spermidine/spermine N1-acetyltransferase 2 hs
MG-U74BV2:115727_AT spermidine/spermine N1-acetyl transferase 2 mm
MG-U74CV2:137171_I_AT spermidine/spermine N1-acetyl transferase 2 mm
MG-U74CV2:139520_R_AT spermidine/spermine N1-acetyl transferase 2 mm
MG-U74CV2:137172_F_AT spermidine/spermine N1-acetyl transferase 2 mm
MOE430B:1430318_AT spermidine/spermine N1-acetyl transferase 2 mm
MOUSE430_2:1430318_AT spermidine/spermine N1-acetyl transferase 2 mm
MU19KSUBA:TC22518_AT Spermidine/spermine N1-acetyl transferase 2, mRNA (cDNA clone MGC:74376 IMAGE:30312881) mm
MU19KSUBA:TC22518_G_AT Spermidine/spermine N1-acetyl transferase 2, mRNA (cDNA clone MGC:74376 IMAGE:30312881) mm
RG-U34C:RC_AI138020_AT spermidine/spermine N1-acetyl transferase 2 (predicted) rn
RAE230A:1374892_AT spermidine/spermine N1-acetyl transferase 2 (predicted) rn
RAT230_2:1374892_AT spermidine/spermine N1-acetyl transferase 2 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02871 Hypothetical protein D2023.4 [Caenorhabditis elegans] ref|NP_505978.1| D2023.4 [Caenorhabditis elegans] 3.0E-89
blast CAB02871 Hypothetical protein D2023.4 [Caenorhabditis elegans] ref|NP_505978.1| D2023.4 [Caenorhabditis elegans] 2.0E-83
blast CAE75292 Hypothetical protein CBG23260 [Caenorhabditis briggsae] 5.0E-75
blast CAE75292 Hypothetical protein CBG23260 [Caenorhabditis briggsae] 6.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 2.2E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024936 2 188-207,220-239
Sequence
Target Sequence 
>C. ELEGANS:190972_AT
ttaccccggatcatgccgaacaactcatttcaatgattcatgagctcgcggagtttgaaa
aaatgaagagcagcgtggtgaatactgccgagaaattgagaaaagatattgaaaacaagg
cagtgcatggattcattgcatttatcggagaggagccagctggaatgaaccttttttact
atgcatattcaacatgggttgggcagtatcttcacatggaagatctctacattcgacctc
agttccgacgaatgggactagcaagaactctgtggaagaagctggctgagttggctcgag
acaaaggaattgttcgtctcgaatgggcagttctcgattggaacaaaaatgcgattgctc
tgtacgacactgttgattatgtaaatttgacaaagagcgaaggatggttcacttttcgaa
tggacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACCCCGGATCATGCCGAACAACT 256 681 38 Antisense
AATGATTCATGAGCTCGCGGAGTTT 566 163 69 Antisense
AGCGTGGTGAATACTGCCGAGAAAT 297 79 109 Antisense
GGAGCCAGCTGGAATGAACCTTTTT 139 523 189 Antisense
GGTTGGGCAGTATCTTCACATGGAA 710 507 234 Antisense
TGGAAGATCTCTACATTCGACCTCA 337 547 254 Antisense
TCGACCTCAGTTCCGACGAATGGGA 674 601 270 Antisense
GAAGCTGGCTGAGTTGGCTCGAGAC 454 343 315 Antisense
TGTTCGTCTCGAATGGGCAGTTCTC 312 563 348 Antisense
AAATGCGATTGCTCTGTACGACACT 537 119 384 Antisense
GGATGGTTCACTTTTCGAATGGACG 616 511 439 Antisense
Sequence Source Affymetrix Proprietary Database