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[190971_at] glutathione S-transferase

Description F37B1.7 /REP_DB=WormBase Gene ID /WP=CE09994 /TR=Q93700 /GB=CAB02293.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_total > 07      4grp_total > 48      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 16.4
(-3)
A 		54.2
(-0.6)
A 		110.5
(3)
A 		27
(-2.3)
A 		94
B 47.7
(1)
A 		56.4
(3)
A 		48.4
(1.2)
A 		29.8
(-3)
A 		27
C 11.6
(-3)
A 		24.2
(-1)
A 		39.8
(1.5)
A 		49.6
(3)
A 		38
avr 25.2
(-3) 		44.9
(-0.1) 		66.2
(3) 		35.5
(-1.5) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 60.3
(3)
A 		39.8
(-0.4)
A 		42.3
(0.1)
A 		23.6
(-3)
A 		27.9
(-2.3)
A 		31.2
(-1.8)
A 		37
B 18.1
(3)
A 		13.8
(1.2)
A 		10.9
(0)
A 		11.9
(0.4)
A 		3.6
(-3)
A 		4.2
(-2.8)
A 		15
C 26
(3)
A 		13.7
(-0.9)
A 		6.9
(-3)
A 		9.7
(-2.1)
A 		13.6
(-0.9)
A 		16
(-0.1)
A 		19
avr 34.8
(3) 		22.4
(-0.8) 		20
(-1.5) 		15.1
(-3) 		15
(-3) 		17.1
(-2.4) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6
(-2.5)
A 		11.8
(-1.1)
A 		28.9
(3)
A 		3.9
(-3)
A 		25
B 15.2
(3)
A 		13.9
(2.1)
A 		11.2
(0.3)
A 		6.3
(-3)
A 		9
C 3.8
(-3)
A 		7
(-1.1)
A 		13.9
(3)
A 		8.4
(-0.3)
A 		10
avr 8.3
(-1.9) 		10.9
(-0.6) 		18
(3) 		6.2
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 11.1
(0.7)
A 		14.2
(3)
A 		9.2
(-0.7)
A 		6
(-3)
A 		8.4
(-1.2)
A 		7.6
(-1.8)
A 		8
B 6.3
(3)
A 		4.6
(0.9)
A 		2.7
(-1.4)
A 		3.1
(-0.9)
A 		1.4
(-3)
A 		1.6
(-2.8)
A 		5
C 9.7
(3)
A 		4.2
(-1.2)
A 		1.8
(-3)
A 		2
(-2.8)
A 		4.4
(-1)
A 		5.4
(-0.3)
A 		8
avr 9
(3) 		7.7
(1.5) 		4.6
(-2) 		3.7
(-3) 		4.7
(-1.9) 		4.9
(-1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190971_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2696
Sequence Type Exemplar sequence
Representative Public ID F37B1.7 NCBI
Target Description F37B1.7 /REP_DB=WormBase Gene ID /WP=CE09994 /TR=Q93700 /GB=CAB02293.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064465 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-18) (gst-18) mRNA, complete cds. 11/11 None
GENEFINDER00000041656 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13628869:13630783:-1 11/11 None
F37B1.7 ENSEMBL cdna:known chromosome:CEL140:II:13629695:13630783:-1 gene:F37B1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041647 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13629691-13630780(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-18
Ensembl F37B1.7
Entrez Gene 185412 Entrez gene
SwissProt Q93700 EMBL-EBI
WormBase CE09994 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02293 Hypothetical protein F37B1.7 [Caenorhabditis elegans] ref|NP_496866.1| Glutathione S-Transferase family member (gst-18) [Caenorhabditis elegans] 1.0E-109
blast CAB02293 Hypothetical protein F37B1.7 [Caenorhabditis elegans] ref|NP_496866.1| Glutathione S-Transferase family member (gst-18) [Caenorhabditis elegans] 1.0E-105
blast CAE73252 Hypothetical protein CBG20668 [Caenorhabditis briggsae] 1.0E-61
blast CAE73252 Hypothetical protein CBG20668 [Caenorhabditis briggsae] 1.0E-60
blast CAB02288 Hypothetical protein F37B1.2 [Caenorhabditis elegans] ref|NP_496862.1| Glutathione S-Transferase family member (gst-12) [Caenorhabditis elegans] 2.0E-60
blast CAB02288 Hypothetical protein F37B1.2 [Caenorhabditis elegans] ref|NP_496862.1| Glutathione S-Transferase family member (gst-12) [Caenorhabditis elegans] 2.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 4.0E-9
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 2.9E-5
Sequence
Target Sequence 
>C. ELEGANS:190971_AT
ttcaatccgcggactcggtgagccaatcagacatttattccatctggccggggtatcatt
tgaggatgaacggcttgcctatggaggtagcccctgggagcaggttaaagaaaagtaccc
gatgagccagttgtctgctgcgatccttcgctaccttggcagaaaattcggattcgctgg
aaaaactcctgaagaagaagcctgggtggatgccgttgtcgatctattcaaagatttcct
gtcagaattcaagcacttaatttatgcaagcttaaatggaaaatcagctgacgagataga
aagggtcagaacagaaatcgccattcccgcgagaaatgtgtatttcaaaaatttgaatga
tctactgaaaaggagcaagtccggattccttattggggatggcatcacgtttgccgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAATCCGCGGACTCGGTGAGCCA 18 685 39 Antisense
GAGCCAATCAGACATTTATTCCATC 336 385 58 Antisense
TTATTCCATCTGGCCGGGGTATCAT 42 679 73 Antisense
ACGGCTTGCCTATGGAGGTAGCCCC 224 95 108 Antisense
GAGGTAGCCCCTGGGAGCAGGTTAA 199 401 122 Antisense
AAAGTACCCGATGAGCCAGTTGTCT 461 121 150 Antisense
ATCCTTCGCTACCTTGGCAGAAAAT 563 39 181 Antisense
TGGATGCCGTTGTCGATCTATTCAA 220 551 245 Antisense
TCAGAACAGAAATCGCCATTCCCGC 37 623 344 Antisense
GTCCGGATTCCTTATTGGGGATGGC 251 475 417 Antisense
GGGGATGGCATCACGTTTGCCGATA 424 497 433 Antisense
Sequence Source Affymetrix Proprietary Database