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[190968_at] glucose transporter (weak) /// ---

Description F11D5.4 /REP_DB=WormBase Gene ID /WP=CE04371 /TR=Q9GYQ0 /GB=AAF99904.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sugar transporter (weak)
Cluster 6grp_total > 72      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 0.9
(-3)
A 		23.7
(-1)
A 		33.8
(-0)
A 		67.7
(3)
A 		67
B 5.2
(-3)
A 		35.8
(1.6)
A 		45.2
(3)
A 		44.2
(2.9)
P 		40
C 35.3
(0.3)
A 		3.6
(-3)
A 		35.1
(0.3)
P 		61.3
(3)
A 		58
avr 13.8
(-3) 		21
(-2) 		38
(0.3) 		57.7
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 2.9
(-3)
A 		5.1
(-2.8)
A 		34.4
(0.5)
A 		8.7
(-2.4)
A 		57.1
(3)
A 		15.8
(-1.6)
A 		54
B 2.8
(-3)
A 		17.4
(-1.4)
A 		57
(2.8)
A 		59.3
(3)
A 		29.5
(-0.2)
A 		4.7
(-2.8)
A 		57
C 21.6
(-2.1)
A 		16.9
(-3)
A 		33.4
(0)
A 		49.9
(3)
P 		46.9
(2.5)
A 		23.6
(-1.8)
A 		33
avr 9.1
(-3) 		13.1
(-2.3) 		41.6
(2.5) 		39.3
(2.1) 		44.5
(3) 		14.7
(-2.1) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.3
(-3)
A 		5.2
(0.1)
A 		8.8
(2.3)
A 		9.9
(3)
A 		10
B 1.7
(-3)
A 		8.8
(1.8)
A 		10.5
(3)
A 		9.4
(2.3)
P 		9
C 11.7
(2.7)
A 		1
(-3)
A 		12.2
(3)
P 		10.3
(2)
A 		11
avr 4.6
(-3) 		5
(-2.6) 		10.5
(3) 		9.9
(2.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.8
(-2.5)
A 		7.5
(-0.5)
A 		2.2
(-2.4)
A 		17.2
(3)
A 		3.8
(-1.8)
A 		17
B 1
(-3)
A 		5.8
(-1)
A 		13.8
(2.2)
A 		15.7
(3)
A 		12
(1.5)
A 		1.7
(-2.7)
A 		15
C 8
(-1.3)
A 		5.2
(-3)
A 		8.5
(-1)
A 		10
(-0.1)
P 		15.2
(3)
A 		7.9
(-1.4)
A 		10
avr 3.2
(-3) 		4.3
(-2.4) 		9.9
(0.5) 		9.3
(0.2) 		14.8
(3) 		4.5
(-2.3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18175
Sequence Type Exemplar sequence
Representative Public ID F11D5.4 NCBI
Target Description F11D5.4 /REP_DB=WormBase Gene ID /WP=CE04371 /TR=Q9GYQ0 /GB=AAF99904.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=sugar transporter (weak)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076169, NM_001029383
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029383 NCBI Caenorhabditis elegans F11D5.7 (F11D5.7) mRNA, complete cds. None
NM_076169 NCBI Caenorhabditis elegans F11D5.5 (F11D5.5) mRNA, complete cds. None
GENEFINDER00000035576 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3304537:3306823:1 None
F11D5.5 ENSEMBL cdna:known chromosome:CEL140:X:3302059:3306912:1 gene:F11D5.5 None
F11D5.7 ENSEMBL cdna:known chromosome:CEL140:X:3304015:3305941:1 gene:F11D5.7 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3305297-3306913(+) 100.0 100.0
Public Domain and Genome References
Gene Title glucose transporter (weak)

Ensembl F11D5.5
F11D5.7
Entrez Gene 184345 Entrez gene
184346 Entrez gene
SwissProt Q5WRR9 EMBL-EBI
WormBase CE38949 Wormbase
CE37628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508570 F11D5.5 [Caenorhabditis elegans] 0.0
blast AAF99904 Hypothetical protein F11D5.5 [Caenorhabditis elegans] 0.0
blast NP_001024554 F11D5.7 [Caenorhabditis elegans] gb|AAV28353.1| Hypothetical protein F11D5.7 [Caenorhabditis elegans] 1.0E-161
blast AAF99904 Hypothetical protein F11D5.5 [Caenorhabditis elegans] 1.0E-120
blast NP_001024554 F11D5.7 [Caenorhabditis elegans] gb|AAV28353.1| Hypothetical protein F11D5.7 [Caenorhabditis elegans] 1.0E-119
blast AAA83627 Hypothetical protein K09C4.1 [Caenorhabditis elegans] ref|NP_508569.1| K09C4.1 [Caenorhabditis elegans] 1.0E-118
blast CAE58072 Hypothetical protein CBG01151 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 6.6E-8
Pfam IPR005828 EMBL-EBI General substrate transporter 1.9E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024554.1 5 10-32,109-126,192-213,226-248,263-285
NP_508570.2 7 12-34,44-66,154-176,191-213,220-242,278-300,396-413
F11D5.5 7 12-34,44-66,154-176,191-213,220-242,278-300,396-413
F11D5.7 5 10-32,109-126,192-213,226-248,263-285
GENEFINDER00000035576 6 20-42,72-94,194-216,231-253,299-316,321-340
Sequence
Target Sequence 
>C. ELEGANS:190968_AT
ctgcatttacccgaatctccaaaatggctcattcaacaagataaactggatgaagcaaaa
atgtctattaaattttatcacggaaaaaagtgcactattgatgaaatagtaacttcattt
attaaagaaagaaacttgactaataaaaataaaatatctttaaaagaagtttgggataac
gaaactcttagagaaggtttgaaaattgtatttgcggtgttactgtttcttgaattcgac
acgtcatacgtaacttcagtttacacaattgattttcataaatcggcaggattcacggtt
caacaagctgcgtcaataaatgaagaaaaaactcctcttatcaaaaatcgggctagaacc
ttcggtgcaaaacgaaatagcattttaaacacacctcgttctcgggtaatgaagataaga
agtttttttcagaactataattttgtaggctttgacattcgaccacaagttcgactcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCATTTACCCGAATCTCCAAAAT 633 233 16 Antisense
ATTTGCGGTGTTACTGTTTCTTGAA 578 17 225 Antisense
GTTTCTTGAATTCGACACGTCATAC 702 449 240 Antisense
ACACGTCATACGTAACTTCAGTTTA 413 109 254 Antisense
AATCGGCAGGATTCACGGTTCAACA 539 167 296 Antisense
TCACGGTTCAACAAGCTGCGTCAAT 422 627 308 Antisense
TCGGGCTAGAACCTTCGGTGCAAAA 405 603 363 Antisense
AGCATTTTAAACACACCTCGTTCTC 217 65 394 Antisense
ACACACCTCGTTCTCGGGTAATGAA 171 109 404 Antisense
TTGTAGGCTTTGACATTCGACCACA 173 705 458 Antisense
CATTCGACCACAAGTTCGACTCAGA 340 217 471 Antisense
Sequence Source Affymetrix Proprietary Database