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[190967_at] angiotensin receptor like

Description C53D6.4 /REP_DB=WormBase Gene ID /WP=CE05489 /TR=Q18810 /GB=CAA94226.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=angiotensin receptor like
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 47      4grp_high_8_8 > 12      6grp_highest_nonorm > 83      6grp_total > 95      4grp_total > 20      6grp_high1_sub > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 357.6
(-2.9)
P 		380
(-2)
P 		354.9
(-3)
P 		512.8
(3)
P 		158
B 451.3
(2.8)
P 		390.3
(-0.2)
P 		332.5
(-3)
P 		454.4
(3)
P 		122
C 427.3
(1.1)
P 		390.5
(-0.9)
P 		352.1
(-3)
P 		461.9
(3)
P 		110
avr 412.1
(0) 		386.9
(-1.1) 		346.5
(-3) 		476.4
(3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 436
(0.2)
P 		305.8
(-2.8)
P 		295.6
(-3)
P 		468.1
(1)
P 		555.1
(3)
P 		489.7
(1.5)
P 		260
B 397.7
(-1.5)
P 		337.8
(-3)
P 		456
(0.1)
P 		551.7
(2.5)
P 		570.3
(3)
P 		563.6
(2.8)
P 		233
C 288.1
(-3)
P 		321.8
(-2.4)
P 		322.9
(-2.4)
P 		541.6
(1.6)
P 		526.6
(1.3)
P 		620.6
(3)
P 		333
avr 373.9
(-1.7) 		321.8
(-3) 		358.2
(-2.1) 		520.5
(2) 		550.7
(2.8) 		558
(3) 		236
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 130.2
(3)
P 		82.5
(-2.2)
P 		92.8
(-1.1)
P 		75.1
(-3)
P 		55
B 143.9
(3)
P 		96.4
(-1.3)
P 		77
(-3)
P 		96.8
(-1.2)
P 		67
C 141.4
(3)
P 		112.3
(0.3)
P 		122.7
(1.2)
P 		77.9
(-3)
P 		64
avr 138.5
(3) 		97.1
(-1.5) 		97.5
(-1.5) 		83.3
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 80.4
(-2.1)
P 		108.7
(-0.4)
P 		64.4
(-3)
P 		118.7
(0.2)
P 		167.5
(3)
P 		119.2
(0.2)
P 		103
B 138.4
(-1.6)
P 		112.4
(-2.9)
P 		110.7
(-3)
P 		146.1
(-1.2)
P 		231.7
(3)
P 		210.1
(1.9)
P 		121
C 106.8
(-1.8)
P 		98.2
(-2.2)
P 		82.2
(-3)
P 		108.9
(-1.7)
P 		170.4
(1.2)
P 		207.7
(3)
P 		126
avr 108.5
(-1.7) 		106.4
(-1.8) 		85.8
(-3) 		124.6
(-0.8) 		189.9
(3) 		179
(2.4) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190967_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9706
Sequence Type Exemplar sequence
Representative Public ID C53D6.4 NCBI
Target Description C53D6.4 /REP_DB=WormBase Gene ID /WP=CE05489 /TR=Q18810 /GB=CAA94226.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=angiotensin receptor like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069167(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069167 NCBI Caenorhabditis elegans C53D6.4 (C53D6.4) mRNA, complete cds. 11/11 None
SNAP00000020664 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9019254:9020915:-1 11/11 None
GENEFINDER00000020670 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9019254:9023587:-1 11/11 None
C53D6.4 ENSEMBL cdna:known chromosome:CEL140:IV:9019162:9020915:-1 gene:C53D6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9019259-9023032(-) 100.0 100.0
Public Domain and Genome References
Gene Title angiotensin receptor like
Ensembl C53D6.4
Entrez Gene 183759 Entrez gene
SwissProt Q18810 EMBL-EBI
WormBase CE36284 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94226 Hypothetical protein C53D6.4 [Caenorhabditis elegans] ref|NP_501568.2| C53D6.4 [Caenorhabditis elegans] 1.0E-171
blast CAA94226 Hypothetical protein C53D6.4 [Caenorhabditis elegans] ref|NP_501568.2| C53D6.4 [Caenorhabditis elegans] 1.0E-151
blast CAE74089 Hypothetical protein CBG21747 [Caenorhabditis briggsae] 1.0E-149
blast CAA94226 Hypothetical protein C53D6.4 [Caenorhabditis elegans] ref|NP_501568.2| C53D6.4 [Caenorhabditis elegans] 1.0E-117
blast CAE74089 Hypothetical protein CBG21747 [Caenorhabditis briggsae] 1.0E-62
blast CAE74089 Hypothetical protein CBG21747 [Caenorhabditis briggsae] 4.0E-42
blast CAE63859 Hypothetical protein CBG08421 [Caenorhabditis briggsae] 3.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000020664 2 5-22,177-199
GENEFINDER00000020670 7 21-43,53-72,93-110,137-159,199-221,231-253,260-278
Sequence
Target Sequence 
>C. ELEGANS:190967_AT
taatgtttcattctcctagttgtccgttctcggcccgtctggctccatatttcaacgaaa
tcgccggaagttatacgaatattctaccagtcgccattgacgcttcagatttcacaaaat
ctcatcgactgaacttccgatatggagtctccggtaccccaactatccttttatgggtga
atggaatgagtgttgctcggatgtcaaacaagaaattagatttggaaagtatcaaagcgt
tgattgcaacacacactgatttggttgaaaataaaaatggaaaaaataatcagtcattta
ttcctgtaaagttggaaaatgtcggctatgaagtgaaagacgttgctactgaaataacgg
aaaatcgattagtgaatggtttgtacatatttgcatgtctacttgtctgtcttgctacat
ttatctatcacgttcgtgagcgaattctgctcagtgctccagttctgcaatggtttcaat
ccaaatgtggtggtccattatgcgaagatatttactttctcttttatgtggcagcaccac
gaaatcgacatccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGTTTCATTCTCCTAGTTGTCC 686 633 1082 Antisense
ATACGAATATTCTACCAGTCGCCAT 30 23 1154 Antisense
CAGTCGCCATTGACGCTTCAGATTT 62 209 1169 Antisense
ATCTCATCGACTGAACTTCCGATAT 159 33 1200 Antisense
TCCGATATGGAGTCTCCGGTACCCC 504 595 1217 Antisense
GCATGTCTACTTGTCTGTCTTGCTA 316 311 1474 Antisense
GCTACATTTATCTATCACGTTCGTG 171 303 1495 Antisense
GTGAGCGAATTCTGCTCAGTGCTCC 481 483 1517 Antisense
CTCAGTGCTCCAGTTCTGCAATGGT 455 229 1531 Antisense
ACTTTCTCTTTTATGTGGCAGCACC 321 103 1595 Antisense
GCAGCACCACGAAATCGACATCCAC 368 313 1612 Antisense
Sequence Source Affymetrix Proprietary Database