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[190965_at] calcium-binding protein

Description T27C10.4 /REP_DB=WormBase Gene ID /WP=CE19606 /TR=Q9TZM5 /GB=AAC67412.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=calcium-binding protein
Cluster 6grp_total > 58      4grp_total > 11      6grp_cgc > 27      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 20.4
(-1.3)
A 		7.9
(-3)
A 		8
(-3)
A 		52.2
(3)
A 		44
B 7.8
(-2.6)
A 		10.1
(-2.3)
A 		5.2
(-3)
A 		46.7
(3)
A 		42
C 44.3
(-3)
A 		57.3
(0.1)
A 		49.1
(-1.9)
A 		69.8
(3)
A 		26
avr 24.2
(-2.4) 		25.1
(-2.3) 		20.8
(-3) 		56.2
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 58.7
(0.9)
A 		5.8
(-3)
A 		18.5
(-2.1)
A 		48.2
(0.1)
A 		36.6
(-0.7)
A 		86.9
(3)
A 		81
B 84.5
(3)
A 		13.1
(-2.6)
A 		54.3
(0.6)
A 		21.8
(-1.9)
A 		8.1
(-3)
A 		39.7
(-0.5)
A 		76
C 61.8
(0.8)
A 		36.2
(-1.2)
A 		13.9
(-3)
A 		73.9
(1.8)
A 		14.6
(-2.9)
A 		89.1
(3)
A 		75
avr 68.3
(2.6) 		18.4
(-3) 		28.9
(-1.8) 		48
(0.3) 		19.8
(-2.8) 		71.9
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.4
(2.8)
A 		1.7
(-3)
A 		2.1
(-2.6)
A 		7.6
(3)
A 		6
B 2.5
(-2.1)
A 		2.5
(-2.1)
A 		1.2
(-3)
A 		10
(3)
A 		9
C 14.7
(0.3)
A 		16.5
(2.3)
A 		17.1
(3)
A 		11.8
(-3)
A 		5
avr 8.2
(-0.2) 		6.9
(-2.8) 		6.8
(-3) 		9.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.8
(-0.3)
A 		2.1
(-3)
A 		4
(-2.4)
A 		12.2
(0.2)
A 		11.1
(-0.2)
A 		21.2
(3)
A 		19
B 29.4
(3)
A 		4.4
(-2.7)
A 		13.2
(-0.7)
A 		5.8
(-2.4)
A 		3.3
(-3)
A 		14.8
(-0.4)
A 		26
C 22.9
(1.4)
A 		11.1
(-1.3)
A 		3.5
(-3)
A 		14.9
(-0.4)
A 		4.7
(-2.7)
A 		29.8
(3)
A 		26
avr 21
(2.7) 		5.9
(-3) 		6.9
(-2.6) 		11
(-1.1) 		6.4
(-2.8) 		21.9
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2403
Sequence Type Exemplar sequence
Representative Public ID T27C10.4 NCBI
Target Description T27C10.4 /REP_DB=WormBase Gene ID /WP=CE19606 /TR=Q9TZM5 /GB=AAC67412.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=calcium-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060436 NCBI Caenorhabditis elegans T27C10.4 (T27C10.4) mRNA, complete cds. 11/11 None
T27C10.4 ENSEMBL cdna:known chromosome:CEL140:I:10884334:10887697:1 gene:T27C10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038119 6/11 Cross Hyb Matching Probes None
SNAP00000038110 6/11 Cross Hyb Matching Probes None
SNAP00000038112 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10884264-10887628(+) 100.0 100.0
Public Domain and Genome References
Gene Title calcium-binding protein
Gene Symbol bath-25
Ensembl T27C10.4
Entrez Gene 188993 Entrez gene
SwissProt Q9TZM5 EMBL-EBI
WormBase CE19606 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_492837 T27C10.4 [Caenorhabditis elegans] gb|AAC67412.1| Hypothetical protein T27C10.4 [Caenorhabditis elegans] 0.0
blast CAE63883 Hypothetical protein CBG08449 [Caenorhabditis briggsae] 8.0E-92
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 2.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 6.1E-25
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 1.3E-9
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 8.2E-4
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.2E-27
Sequence
Target Sequence 
>C. ELEGANS:190965_AT
gtttccaagctgtttctatcattccaatcttcatatttccacgcactacttctcggaaac
tttattgaatctacgagctcagaaatcgaactaaaagatgtcaactctacatattttcaa
tatttcttggagcttctccatggagaatcttcaatcactgctgaaaatgttgagcacatt
ctccatctggcagatatgttcgatgcacgaacagcaattcggagatgcgaggaatttctg
aactccctctgtccgaatgtgaagctgaaagataaattaagactggccgtgcagtataga
cttggcacattgaaggagctaaccaatgatcttttggcgagaaagcacttgacgaaaact
gaagaggagattcgtaaggtgttccaagatttggacaaagacggagatggcttcatctct
gttgctgaactgcaagccgtcatgaccaacttgcaagcatggctgactgaagaagagatc
gacgatgggattcgtagcgccgatatcagcggagatgggctggtcgatttagaggagttc
atcgatgtgaccatgcattcgcagcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCCAAGCTGTTTCTATCATTCC 504 451 484 Antisense
CATTCCAATCTTCATATTTCCACGC 537 217 503 Antisense
TTCCACGCACTACTTCTCGGAAACT 24 701 520 Antisense
AGCACATTCTCCATCTGGCAGATAT 344 77 656 Antisense
GAGGAATTTCTGAACTCCCTCTGTC 432 405 712 Antisense
TCCCTCTGTCCGAATGTGAAGCTGA 456 597 727 Antisense
GCTTCATCTCTGTTGCTGAACTGCA 218 305 893 Antisense
AACTGCAAGCCGTCATGACCAACTT 27 143 911 Antisense
GGGATTCGTAGCGCCGATATCAGCG 114 497 970 Antisense
GCGGAGATGGGCTGGTCGATTTAGA 199 287 992 Antisense
GATGTGACCATGCATTCGCAGCAGT 406 409 1027 Antisense
Sequence Source Affymetrix Proprietary Database