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[190964_at] alpha/beta hydrolase fold

Description F32B4.6 /REP_DB=WormBase Gene ID /WP=CE17746 /TR=O62202 /GB=CAB04232.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=alpha-beta hydrolase fold
Cluster 6grp_total > 61      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.8
(-0.7)
A 		5.1
(-1.5)
A 		9
(3)
A 		3.8
(-3)
A 		5
B 4.9
(-3)
A 		6.6
(-2)
A 		14.7
(3)
A 		5.9
(-2.4)
A 		10
C 3.8
(-1.5)
A 		7.2
(2.4)
A 		2.5
(-3)
A 		7.7
(3)
A 		5
avr 4.8
(-3) 		6.3
(-0.7) 		8.7
(3) 		5.8
(-1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 13.1
(-0.3)
A 		3.6
(-3)
A 		24.8
(3)
A 		15.1
(0.3)
A 		17.8
(1)
A 		5.3
(-2.5)
A 		21
B 2.9
(-3)
A 		28.5
(3)
A 		12.9
(-0.7)
A 		4.4
(-2.6)
A 		3.6
(-2.8)
A 		8.8
(-1.6)
A 		26
C 5.9
(-2.5)
A 		6.2
(-2.4)
A 		8.6
(-2)
A 		33.9
(3)
A 		3.3
(-3)
A 		6.8
(-2.3)
A 		31
avr 7.3
(-2.8) 		12.8
(0.2) 		15.4
(1.7) 		17.8
(3) 		8.2
(-2.3) 		7
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.1
(2.3)
A 		1.1
(-1.2)
A 		2.3
(3)
A 		0.6
(-3)
A 		2
B 1.6
(-2.1)
A 		1.6
(-2.1)
A 		3.4
(3)
A 		1.3
(-3)
A 		2
C 1.3
(-1)
A 		2.1
(3)
A 		0.9
(-3)
A 		1.3
(-1)
A 		1
avr 1.7
(0.3) 		1.6
(-0.3) 		2.2
(3) 		1.1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.4
(-1.4)
A 		1.3
(-3)
A 		5.4
(3)
A 		3.8
(0.7)
A 		5.4
(3)
A 		1.3
(-3)
A 		4
B 1
(-3)
A 		9.5
(3)
A 		3.1
(-1.5)
A 		1.2
(-2.9)
A 		1.5
(-2.6)
A 		3.3
(-1.4)
A 		9
C 2.2
(-1.8)
A 		1.9
(-2.2)
A 		2.2
(-1.8)
A 		6.8
(3)
A 		1.1
(-3)
A 		2.3
(-1.7)
A 		6
avr 1.9
(-3) 		4.2
(3) 		3.6
(1.4) 		3.9
(2.2) 		2.7
(-0.9) 		2.3
(-2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190964_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1818
Sequence Type Exemplar sequence
Representative Public ID F32B4.6 NCBI
Target Description F32B4.6 /REP_DB=WormBase Gene ID /WP=CE17746 /TR=O62202 /GB=CAB04232.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=alpha-beta hydrolase fold
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060541(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060541 NCBI Caenorhabditis elegans F32B4.6 (F32B4.6) mRNA, complete cds. 11/11 None
SNAP00000030032 ENSEMBL cdna:SNAP chromosome:CEL140:I:11518189:11525231:1 11/11 None
GENEFINDER00000030044 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11523184:11525231:1 11/11 None
F32B4.6 ENSEMBL cdna:known chromosome:CEL140:I:11523250:11525231:1 gene:F32B4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11523180-11525162(+) 100.0 100.0
Public Domain and Genome References
Gene Title alpha/beta hydrolase fold
Ensembl F32B4.6
Entrez Gene 185192 Entrez gene
SwissProt O62202 EMBL-EBI
WormBase CE17746 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04238 Hypothetical protein F32B4.1 [Caenorhabditis elegans] ref|NP_492940.1| F32B4.1 [Caenorhabditis elegans] 0.0
blast CAB04232 Hypothetical protein F32B4.6 [Caenorhabditis elegans] ref|NP_492942.1| F32B4.6 [Caenorhabditis elegans] 1.0E-172
blast CAE69315 Hypothetical protein CBG15380 [Caenorhabditis briggsae] 1.0E-148
blast CAE69315 Hypothetical protein CBG15380 [Caenorhabditis briggsae] 1.0E-147
blast CAB03219 Hypothetical protein R05D7.4 [Caenorhabditis elegans] ref|NP_493077.1| R05D7.4 [Caenorhabditis elegans] 8.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030032 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:190964_AT
gaaaggcggttacacagctggcgacaacaccagaatattcttcgaggattaagagtttga
ttgtcgaggatatgtcaccgttggggtatccgttgaagagagctgaatacctcgaatgta
tcaaacaaatgatcgccactgatatgaacaaatcgcgaagcgaagtgatggcggagctcg
gcgaaaaagtgtcaaaggtgctgctctaccaatttgtgcgcggaaatttgggtgaagatg
tgaacggaaaagctcattggatatgcaatctgaatgttatcgatgagacatacatttatc
tgctcagccacgacattcggttcggagttttcgatggtccgactctgttccagcgggctc
ctggctcgggattccttccggcggctcataagaatcgagtagagaaaatgttcccaatgg
tgcaattcgccgaaactgcctggtcgaaccactggattcatgctgatgacccgaaattct
ttgtcgactcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGGCGGTTACACAGCTGGCGAC 506 359 362 Antisense
ATATGTCACCGTTGGGGTATCCGTT 239 19 431 Antisense
AAGTGATGGCGGAGCTCGGCGAAAA 558 157 524 Antisense
CTGCTCTACCAATTTGTGCGCGGAA 698 237 562 Antisense
ATACATTTATCTGCTCAGCCACGAC 133 25 651 Antisense
CAGCCACGACATTCGGTTCGGAGTT 149 201 666 Antisense
CGGAGTTTTCGATGGTCCGACTCTG 531 229 684 Antisense
CCTTCCGGCGGCTCATAAGAATCGA 276 265 735 Antisense
GTTCCCAATGGTGCAATTCGCCGAA 346 437 771 Antisense
AACTGCCTGGTCGAACCACTGGATT 465 141 795 Antisense
GACCCGAAATTCTTTGTCGACTCGA 390 373 829 Antisense
Sequence Source Affymetrix Proprietary Database