[Home] | [Total List]

[190962_s_at] glutathione S-transferase

Description F37B1.8 /REP_DB=WormBase Gene ID /WP=CE09995 /TR=Q93701 /GB=CAB02294.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 61      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 62      6grp_total > 51      4grp_total > 43      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 04      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 346.8
(1.9)
P 		367
(3)
P 		268.5
(-2.2)
P 		252.7
(-3)
P 		114
B 229.9
(-2.8)
P 		390.3
(3)
P 		225.2
(-3)
P 		254.2
(-1.9)
P 		165
C 342.3
(1)
P 		369.7
(3)
P 		289.2
(-3)
P 		294.3
(-2.6)
P 		81
avr 306.3
(-0.6) 		375.7
(3) 		261
(-3) 		267.1
(-2.7) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 573
1 2 3 4 5 6 range
A 290.7
(-2.6)
P 		379.3
(-1.7)
P 		797.8
(3)
P 		675.6
(1.6)
P 		299.5
(-2.5)
P 		258.8
(-3)
P 		539
B 395
(-1.2)
P 		296.7
(-2.3)
P 		513
(0.3)
P 		740.1
(3)
P 		241.9
(-3)
P 		243.9
(-3)
P 		498
C 435.3
(-1.2)
P 		354.1
(-2.1)
P 		814.6
(3)
P 		567.9
(0.3)
P 		272.3
(-3)
P 		285.9
(-2.8)
P 		542
avr 373.7
(-1.5) 		343.4
(-1.9) 		708.5
(3) 		661.2
(2.4) 		271.2
(-2.9) 		262.9
(-3) 		446
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 126.3
(3)
P 		79.7
(-0.1)
P 		70.2
(-0.8)
P 		37
(-3)
P 		89
B 73.3
(-0.1)
P 		96.4
(3)
P 		52.2
(-3)
P 		54.2
(-2.7)
P 		44
C 113.3
(3)
P 		106.3
(2.3)
P 		100.8
(1.8)
P 		49.6
(-3)
P 		64
avr 104.3
(3) 		94.1
(1.9) 		74.4
(-0.1) 		46.9
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 53.6
(-3)
P 		134.9
(1.1)
P 		173.7
(3)
P 		171.3
(2.9)
P 		90.4
(-1.2)
P 		63
(-2.5)
P 		120
B 137.4
(-0.3)
P 		98.8
(-2.6)
P 		124.6
(-1.1)
P 		196
(3)
P 		98.3
(-2.6)
P 		91
(-3)
P 		105
C 161.3
(0.7)
P 		108.1
(-2)
P 		207.3
(3)
P 		114.2
(-1.7)
P 		88.1
(-3)
P 		95.7
(-2.6)
P 		119
avr 117.4
(-0.6) 		113.9
(-0.8) 		168.5
(3) 		160.5
(2.4) 		92.3
(-2.4) 		83.2
(-3) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190962_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3860
Sequence Type Exemplar sequence
Representative Public ID F37B1.8 NCBI
Target Description F37B1.8 /REP_DB=WormBase Gene ID /WP=CE09995 /TR=Q93701 /GB=CAB02294.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064463(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064463 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-19) (gst-19) mRNA, complete cds. 11/11 None
SNAP00000041647 ENSEMBL cdna:SNAP chromosome:CEL140:II:13625481:13630149:-1 9/11 None
GENEFINDER00000041658 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13625481:13625963:-1 9/11 None
F37B1.8 ENSEMBL cdna:known chromosome:CEL140:II:13625481:13627037:-1 gene:F37B1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13625477-13627034(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-19
Ensembl F37B1.8
Entrez Gene 175010 Entrez gene
SwissProt Q93701 EMBL-EBI
WormBase CE09995 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02294 Hypothetical protein F37B1.8 [Caenorhabditis elegans] ref|NP_496864.1| Glutathione S-Transferase family member (gst-19) [Caenorhabditis elegans] 1.0E-105
blast CAB02292 Hypothetical protein F37B1.6 [Caenorhabditis elegans] ref|NP_496865.1| Glutathione S-Transferase family member (gst-17) [Caenorhabditis elegans] 7.0E-88
blast CAB02294 Hypothetical protein F37B1.8 [Caenorhabditis elegans] ref|NP_496864.1| Glutathione S-Transferase family member (gst-19) [Caenorhabditis elegans] 4.0E-76
blast CAB02294 Hypothetical protein F37B1.8 [Caenorhabditis elegans] ref|NP_496864.1| Glutathione S-Transferase family member (gst-19) [Caenorhabditis elegans] 3.0E-75
blast CAB02288 Hypothetical protein F37B1.2 [Caenorhabditis elegans] ref|NP_496862.1| Glutathione S-Transferase family member (gst-12) [Caenorhabditis elegans] 2.0E-70
blast CAB02293 Hypothetical protein F37B1.7 [Caenorhabditis elegans] ref|NP_496866.1| Glutathione S-Transferase family member (gst-18) [Caenorhabditis elegans] 3.0E-68
blast CAB02289 Hypothetical protein F37B1.3 [Caenorhabditis elegans] ref|NP_496861.1| Glutathione S-Transferase family member (gst-14) [Caenorhabditis elegans] 6.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.0E-5
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 4.5E-10
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.1E-11
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 3.6E-6
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.1E-11
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.6E-5
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.1E-11
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.9E-16
Sequence
Target Sequence 
>C. ELEGANS:190962_S_AT
gtgagacttttgttccatctagctgattgcccgtttaaagatgaacggtttagttttgag
gagtggggagctgtgaagtcaaagtccccaatgggtcagctacccatcctaggcgtcgac
ggacttgagatcccccaatctgctgcaattctccgctaccttgctctgaaattcggattt
gctgggaaaactccagaggatcgagcttgggtggacgccgtagtcgatcggttcaaggat
ttcttcgtagaattcaaaaagttcctggttgcaaagcgtggcggaaaatcagaggaagaa
gtcgcaaaagttgtgtcagaatctgtagtcccagctatggaatcctactttaagcttctc
aatggtctgctggaaagaagcaagtccggattcctgatcggaaattctattacttacgcg
gatcttgtagtcgtcaataatctggagactcttagaaactttggatttctgaatgcatcg
gagcaaccgaaattgacggctcttctagagaaagtgtactcgcagccagggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAGACTTTTGTTCCATCTAGCTG 696 481 64 Antisense
CATCTAGCTGATTGCCCGTTTAAAG 535 211 79 Antisense
CATCCTAGGCGTCGACGGACTTGAG 419 211 168 Antisense
GCTACCTTGCTCTGAAATTCGGATT 273 303 218 Antisense
TGGACGCCGTAGTCGATCGGTTCAA 243 549 275 Antisense
AGTTCCTGGTTGCAAAGCGTGGCGG 66 63 323 Antisense
TAGTCCCAGCTATGGAATCCTACTT 427 637 389 Antisense
TAAGCTTCTCAATGGTCTGCTGGAA 561 637 414 Antisense
AATTCTATTACTTACGCGGATCTTG 76 177 466 Antisense
GCAACCGAAATTGACGGCTCTTCTA 2 317 546 Antisense
GAAAGTGTACTCGCAGCCAGGGATC 484 359 573 Antisense
Sequence Source Affymetrix Proprietary Database