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[190961_s_at]

Description F44D12.11 /REP_DB=WormBase Gene ID /WP=CE05866 /TR=Q20399 /GB=CAA92608.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 11      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 27.4
(3)
A 		23.6
(0)
A 		27.2
(2.8)
A 		19.7
(-3)
A 		8
B 36.8
(3)
A 		35.5
(2.7)
A 		8
(-2.8)
A 		7.2
(-3)
A 		30
C 6.8
(-2.8)
A 		4.7
(-3)
A 		17.4
(-1.7)
A 		63.6
(3)
A 		59
avr 23.7
(-0.1) 		21.3
(-1.2) 		17.5
(-3) 		30.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 9.8
(-1.7)
A 		4.7
(-2.8)
A 		32.2
(3)
A 		3.8
(-3)
A 		3.6
(-3)
A 		7.2
(-2.2)
A 		29
B 3.3
(-3)
A 		49.9
(3)
A 		18
(-1.1)
A 		5.6
(-2.7)
A 		9.5
(-2.2)
A 		4.5
(-2.8)
A 		47
C 8.7
(-1.8)
A 		31.9
(3)
A 		6.2
(-2.3)
A 		2.8
(-3)
A 		20.6
(0.7)
A 		4.1
(-2.7)
A 		29
avr 7.3
(-2.2) 		28.8
(3) 		18.8
(0.6) 		4.1
(-3) 		11.2
(-1.3) 		5.3
(-2.7) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10
(3)
A 		5.1
(-1.1)
A 		7.1
(0.5)
A 		2.9
(-3)
A 		7
B 11.7
(3)
A 		8.8
(1.3)
A 		1.9
(-2.8)
A 		1.5
(-3)
A 		10
C 2.3
(-2.4)
A 		1.3
(-3)
A 		6.1
(0.1)
A 		10.7
(3)
A 		9
avr 8
(3) 		5.1
(-2.8) 		5
(-3) 		5
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.8
(-2.2)
A 		1.7
(-2.3)
A 		7
(3)
A 		1
(-3)
A 		1.1
(-2.9)
A 		1.8
(-2.2)
A 		6
B 1.1
(-3)
A 		16.6
(3)
A 		4.4
(-1.7)
A 		1.5
(-2.8)
A 		3.9
(-1.9)
A 		1.7
(-2.8)
A 		16
C 3.2
(-1.3)
A 		9.7
(3)
A 		1.6
(-2.3)
A 		0.6
(-3)
A 		6.7
(1)
A 		1.4
(-2.5)
A 		9
avr 2
(-2.3) 		9.3
(3) 		4.3
(-0.6) 		1
(-3) 		3.9
(-0.9) 		1.6
(-2.6) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190961_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8841
Sequence Type Exemplar sequence
Representative Public ID F44D12.11 NCBI
Target Description F44D12.11 /REP_DB=WormBase Gene ID /WP=CE05866 /TR=Q20399 /GB=CAA92608.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000005421 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10038477:10039013:-1 None
SNAP00000005410 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10038424:10039013:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10037458-10039019(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T22168 hypothetical protein F44D12.11 - Caenorhabditis elegans 3.0E-93
blast AAB42279 Hypothetical protein F21F3.2 [Caenorhabditis elegans] ref|NP_491474.1| F21F3.2 [Caenorhabditis elegans] 6.0E-89
blast T22168 hypothetical protein F44D12.11 - Caenorhabditis elegans 1.0E-82
blast CAE64384 Hypothetical protein CBG09071 [Caenorhabditis briggsae] 1.0E-80
blast AAB42279 Hypothetical protein F21F3.2 [Caenorhabditis elegans] ref|NP_491474.1| F21F3.2 [Caenorhabditis elegans] 5.0E-79
blast CAE64384 Hypothetical protein CBG09071 [Caenorhabditis briggsae] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.3E-27
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-18
Sequence
Target Sequence 
>C. ELEGANS:190961_S_AT
ccgtcttgctctattggtcaaggctgacaacagggatcaggggattccaaactgtgagaa
gagcaactcttatgagaatgtttttccgagaagatcaacacttatcccgaaggaacagaa
gatggctcgtgatgtcaaatcgaatgaggacaactctgacgatcgacgtggtggggcatc
aagtgaagatcgtagatcatcggaggctgcgtcggctgctgctaagcgttccgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTCTTGCTCTATTGGTCAAGGCT 360 265 944 Antisense
GGTCAAGGCTGACAACAGGGATCAG 54 503 959 Antisense
GGGATCAGGGGATTCCAAACTGTGA 25 493 976 Antisense
GCAACTCTTATGAGAATGTTTTTCC 545 319 1006 Antisense
GAAGATCAACACTTATCCCGAAGGA 562 337 1033 Antisense
GAAGATGGCTCGTGATGTCAAATCG 682 337 1061 Antisense
GAATGAGGACAACTCTGACGATCGA 314 331 1085 Antisense
TGACGATCGACGTGGTGGGGCATCA 689 565 1100 Antisense
GGTGGGGCATCAAGTGAAGATCGTA 691 499 1113 Antisense
TCGTAGATCATCGGAGGCTGCGTCG 155 603 1133 Antisense
TCGGCTGCTGCTAAGCGTTCCGAAT 464 607 1155 Antisense
Sequence Source Affymetrix Proprietary Database