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[190960_at]

Description F44D12.11 /REP_DB=WormBase Gene ID /WP=CE05866 /TR=Q20399 /GB=CAA92608.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 11      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 39.1
(-0.1)
A 		9.5
(-3)
A 		31.7
(-0.8)
A 		71.2
(3)
A 		62
B 54.2
(3)
A 		30.4
(-0.3)
A 		11.1
(-3)
A 		50.4
(2.5)
A 		43
C 12.3
(-3)
A 		56.7
(3)
A 		16.8
(-2.4)
A 		47.2
(1.7)
A 		44
avr 35.2
(-0.5) 		32.2
(-1) 		19.9
(-3) 		56.3
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 6.8
(-3)
A 		16.4
(-1.8)
A 		56
(3)
A 		7.3
(-2.9)
A 		7.7
(-2.9)
A 		13.5
(-2.2)
A 		49
B 11.3
(-2.3)
A 		69.6
(3)
A 		18.3
(-1.7)
A 		8.8
(-2.6)
A 		4.1
(-3)
A 		6.3
(-2.8)
A 		66
C 24.1
(3)
A 		9.2
(-1.8)
A 		5.8
(-2.9)
A 		7.7
(-2.3)
A 		20.4
(1.8)
A 		5.5
(-3)
A 		19
avr 14.1
(-1.4) 		31.7
(3) 		26.7
(1.7) 		7.9
(-3) 		10.7
(-2.3) 		8.4
(-2.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.2
(3)
A 		2.1
(-3)
A 		8.3
(0.1)
A 		10.4
(1.1)
A 		12
B 17.3
(3)
A 		7.5
(-1)
A 		2.6
(-3)
A 		10.7
(0.3)
A 		15
C 4.1
(-3)
A 		16.3
(3)
A 		5.9
(-2.1)
A 		8
(-1.1)
A 		12
avr 11.9
(3) 		8.6
(-0.1) 		5.6
(-3) 		9.7
(0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.2
(-3)
A 		5.8
(-0.5)
A 		12.2
(3)
A 		1.9
(-2.6)
A 		2.3
(-2.4)
A 		3.3
(-1.9)
A 		11
B 3.9
(-2.4)
A 		23.2
(3)
A 		4.4
(-2.2)
A 		2.3
(-2.8)
A 		1.7
(-3)
A 		2.3
(-2.8)
A 		22
C 8.9
(3)
A 		2.8
(-1.9)
A 		1.5
(-3)
A 		1.6
(-2.9)
A 		6.6
(1.1)
A 		1.8
(-2.8)
A 		7
avr 4.7
(-1.1) 		10.6
(3) 		6
(-0.2) 		1.9
(-3) 		3.5
(-1.9) 		2.5
(-2.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8841
Sequence Type Exemplar sequence
Representative Public ID F44D12.11 NCBI
Target Description F44D12.11 /REP_DB=WormBase Gene ID /WP=CE05866 /TR=Q20399 /GB=CAA92608.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000005421 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10038477:10039013:-1 None
SNAP00000005410 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10038424:10039013:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10037458-10039019(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T22168 hypothetical protein F44D12.11 - Caenorhabditis elegans 3.0E-93
blast AAB42279 Hypothetical protein F21F3.2 [Caenorhabditis elegans] ref|NP_491474.1| F21F3.2 [Caenorhabditis elegans] 6.0E-89
blast T22168 hypothetical protein F44D12.11 - Caenorhabditis elegans 1.0E-82
blast CAE64384 Hypothetical protein CBG09071 [Caenorhabditis briggsae] 1.0E-80
blast AAB42279 Hypothetical protein F21F3.2 [Caenorhabditis elegans] ref|NP_491474.1| F21F3.2 [Caenorhabditis elegans] 5.0E-79
blast CAE64384 Hypothetical protein CBG09071 [Caenorhabditis briggsae] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 6.3E-27
Pfam IPR000719 EMBL-EBI Protein kinase 1.2E-18
Sequence
Target Sequence 
>C. ELEGANS:190960_AT
ttgcacagttgatgtttggtccgctggatgcatcatggcggaaatggtgaagcgccgcgt
ggtttttccgggtagagacagtgctcaacagatgaagctctactgccgctgctttggagt
ccccactgagcaagatattcttgcgatgaaaggagaaagattggagaacgagttgtggaa
atttactaaaggatttggacttcaaagacttgtgaccgaaattactccggatcagcttca
gttcatcaagcgaatccttgtctatactcccgagaagcgtcttcatggcaagcagctact
tcaggacgacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCACAGTTGATGTTTGGTCCGCT 510 699 606 Antisense
TTGGTCCGCTGGATGCATCATGGCG 354 709 621 Antisense
AATGGTGAAGCGCCGCGTGGTTTTT 296 163 648 Antisense
GTTTTTCCGGGTAGAGACAGTGCTC 67 449 667 Antisense
TTGGAGTCCCCACTGAGCAAGATAT 156 701 719 Antisense
ACCGAAATTACTCCGGATCAGCTTC 363 87 820 Antisense
ATCAGCTTCAGTTCATCAAGCGAAT 93 29 836 Antisense
CAAGCGAATCCTTGTCTATACTCCC 10 187 852 Antisense
GTCTATACTCCCGAGAAGCGTCTTC 610 467 865 Antisense
GAAGCGTCTTCATGGCAAGCAGCTA 104 343 879 Antisense
CAAGCAGCTACTTCAGGACGACTTC 606 185 894 Antisense
Sequence Source Affymetrix Proprietary Database