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[190959_s_at] glutathione S-transferase

Description F37B1.5 /REP_DB=WormBase Gene ID /WP=CE09992 /TR=Q93698 /GB=CAB02291.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_high1_10_10 > 08      6grp_total > 18      4grp_total > 05      6grp_cgc > 01      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 450
1 2 3 4 range
A 185.4
(-1.6)
P 		79.3
(-3)
A 		87.9
(-2.9)
A 		520.3
(3)
P 		441
B 230.1
(-0.7)
P 		143.8
(-2.1)
A 		82.2
(-3)
A 		474.7
(3)
P 		393
C 284.8
(0.2)
P 		87.7
(-2.7)
A 		70.8
(-3)
A 		467.5
(3)
P 		397
avr 233.4
(-0.7) 		103.6
(-2.7) 		80.3
(-3) 		487.5
(3) 		407

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 373
(3)
P 		133
(-3)
M 		191.1
(-1.5)
P 		148.9
(-2.6)
P 		207.4
(-1.1)
P 		158.1
(-2.4)
A 		240
B 339.1
(3)
P 		169.9
(-1.5)
A 		111.8
(-3)
P 		180.1
(-1.2)
P 		131.2
(-2.5)
P 		124
(-2.7)
P 		227
C 297.8
(3)
P 		59.6
(-3)
P 		193.6
(0.4)
P 		193.4
(0.4)
P 		175.5
(-0.1)
P 		133.9
(-1.1)
P 		238
avr 336.6
(3) 		120.8
(-3) 		165.5
(-1.8) 		174.1
(-1.5) 		171.4
(-1.6) 		138.7
(-2.5) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 67.5
(2.1)
P 		17.2
(-3)
A 		23
(-2.4)
A 		76.2
(3)
P 		59
B 73.4
(1)
P 		35.5
(-1.8)
A 		19.1
(-3)
A 		101.2
(3)
P 		82
C 94.3
(3)
P 		25.2
(-3)
A 		24.7
(-3)
A 		78.8
(1.7)
P 		70
avr 78.4
(2.3) 		26
(-2.6) 		22.3
(-3) 		85.4
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 68.8
(3)
P 		47.3
(-1.2)
M 		41.6
(-2.3)
P 		37.8
(-3)
P 		62.6
(1.8)
P 		38.5
(-2.9)
A 		31
B 118
(3)
P 		56.5
(-1.1)
A 		27.2
(-3)
P 		47.7
(-1.6)
P 		53.3
(-1.3)
P 		46.2
(-1.7)
P 		91
C 110.4
(3)
P 		18.2
(-3)
P 		49.3
(-1)
P 		38.9
(-1.7)
P 		56.8
(-0.5)
P 		44.8
(-1.3)
P 		92
avr 99.1
(3) 		40.7
(-2.9) 		39.4
(-3) 		41.5
(-2.8) 		57.6
(-1.2) 		43.2
(-2.6) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190959_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3725
Sequence Type Exemplar sequence
Representative Public ID F37B1.5 NCBI
Target Description F37B1.5 /REP_DB=WormBase Gene ID /WP=CE09992 /TR=Q93698 /GB=CAB02291.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064462(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064462 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-16) (gst-16) mRNA, complete cds. 11/11 None
SNAP00000041646 ENSEMBL cdna:SNAP chromosome:CEL140:II:13622929:13624329:-1 11/11 None
GENEFINDER00000041649 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13622929:13624329:-1 11/11 None
F37B1.5 ENSEMBL cdna:known chromosome:CEL140:II:13622929:13624329:-1 gene:F37B1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13622925-13624326(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-16
Ensembl F37B1.5
Entrez Gene 175009 Entrez gene
SwissProt Q93698 EMBL-EBI
WormBase CE09992 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02291 Hypothetical protein F37B1.5 [Caenorhabditis elegans] ref|NP_496863.1| Glutathione S-Transferase family member (gst-16) [Caenorhabditis elegans] 1.0E-116
blast 1YQ1 Chain , Structural Genomics Of Caenorhabditis Elegans: Glutathione S-Transferase pdb|1YQ1|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Glutathione S-Transferase 1.0E-114
blast CAB02288 Hypothetical protein F37B1.2 [Caenorhabditis elegans] ref|NP_496862.1| Glutathione S-Transferase family member (gst-12) [Caenorhabditis elegans] 7.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 4.5E-9
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 2.5E-18
Sequence
Target Sequence 
>C. ELEGANS:190959_S_AT
gcgagccaattcggcttctgtttcatctcgctggagttcaatttgaagaggttcgtatga
acccggatcaaacatggttggatattaaagattcaactccaatgaagcagcttccagtct
tgaacattgatggattcgaacttccccagtccggtgctatcctccgctacctcgccagaa
aattcggcttcgctgggaaaactcccgaagaagaagcctgggtggacgcagtccacgatc
tattcaaggatttccttgccgaattcaaaaagtttgccgcagaacgacgcagtggaaaat
ctgctgaagaagttgaaaagttcagatcagaatttttcctgccagctagaaatacctact
ttaacatcctcaatggacttctggaaaagagcaattcgggatttctcatcggaagtgaca
tcacttttgcggatcttgtcgttgttgataatctgctgactctaaaaaactacgggctct
tcgatgaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGAGCCAATTCGGCTTCTGTTTCA 75 291 56 Antisense
TTCTGTTTCATCTCGCTGGAGTTCA 606 693 71 Antisense
GAAGCAGCTTCCAGTCTTGAACATT 262 341 159 Antisense
TTGATGGATTCGAACTTCCCCAGTC 513 705 182 Antisense
TTCGGCTTCGCTGGGAAAACTCCCG 328 693 238 Antisense
TGGACGCAGTCCACGATCTATTCAA 100 549 278 Antisense
GTTTGCCGCAGAACGACGCAGTGGA 271 451 327 Antisense
AGATCAGAATTTTTCCTGCCAGCTA 552 65 379 Antisense
AATACCTACTTTAACATCCTCAATG 699 171 406 Antisense
GTGACATCACTTTTGCGGATCTTGT 319 483 470 Antisense
AAAACTACGGGCTCTTCGATGAATC 172 129 521 Antisense
Sequence Source Affymetrix Proprietary Database