[Home] | [Total List]

[190958_s_at] Heat shock hsp70 proteins /// Heat shock hsp70 proteins

Description F44E5.4 /REP_DB=WormBase Gene ID /WP=CE18679 /TR=Q9XTL8 /GB=CAB05507.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Heat shock hsp70 proteins
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 74      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 28      6grp_total > 65      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12573
1 2 3 4 range
A 16031.4
(3)
P 		3458.6
(-3)
P 		9706.6
(-0)
P 		9814.4
(0)
P 		12573
B 15355.6
(3)
P 		4283.6
(-3)
P 		9545.4
(-0.1)
P 		11936.6
(1.1)
P 		11072
C 15253.9
(3)
P 		4278.2
(-3)
P 		10858.4
(0.6)
P 		13259.2
(1.9)
P 		10976
avr 15547
(3) 		4006.8
(-3) 		10036.8
(0.1) 		11670.1
(1) 		11540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7835
1 2 3 4 5 6 range
A 6052.3
(-3)
P 		10353.1
(0.3)
P 		12085.4
(1.6)
P 		11720.3
(1.3)
P 		7972.1
(-1.5)
P 		13887.2
(3)
P 		7835
B 8902.7
(-3)
P 		10940.5
(0.1)
P 		12648.3
(2.8)
P 		9575.7
(-2)
P 		9104.4
(-2.7)
P 		12809.7
(3)
P 		3907
C 8237.2
(-3)
P 		10749.9
(0.1)
P 		11637.4
(1.2)
P 		11403.9
(1)
P 		8614
(-2.5)
P 		13042.1
(3)
P 		4805
avr 7730.7
(-3) 		10681.2
(0.2) 		12123.7
(1.8) 		10900
(0.4) 		8563.5
(-2.1) 		13246.3
(3) 		5516
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5086
1 2 3 4 range
A 5837
(3)
P 		750.8
(-3)
P 		2537.5
(-0.9)
P 		1436.6
(-2.2)
P 		5086
B 4896.8
(3)
P 		1058
(-3)
P 		2211.9
(-1.2)
P 		2543.7
(-0.7)
P 		3839
C 5049.5
(3)
P 		1230
(-3)
P 		3784.5
(1)
P 		2235.7
(-1.4)
P 		3820
avr 5261.1
(3) 		1012.9
(-3) 		2844.6
(-0.4) 		2072
(-1.5) 		4248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3661
1 2 3 4 5 6 range
A 1115.7
(-3)
P 		3682.1
(3)
P 		2631.9
(0.5)
P 		2972.6
(1.3)
P 		2405.6
(0)
P 		3381.1
(2.3)
P 		2566
B 3097.7
(-1.5)
P 		3641.6
(-0)
P 		3071.4
(-1.6)
P 		2536.3
(-3)
P 		3699
(0.1)
P 		4776.7
(3)
P 		2240
C 3053.2
(-0.8)
P 		3280.1
(-0.1)
P 		2961.9
(-1.1)
P 		2293.3
(-3)
P 		2787.4
(-1.6)
P 		4365.9
(3)
P 		2073
avr 2422.2
(-3) 		3534.6
(0.8) 		2888.4
(-1.4) 		2600.7
(-2.4) 		2964
(-1.1) 		4174.6
(3) 		1752
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190958_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3587
Sequence Type Exemplar sequence
Representative Public ID F44E5.4 NCBI
Target Description F44E5.4 /REP_DB=WormBase Gene ID /WP=CE18679 /TR=Q9XTL8 /GB=CAB05507.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Heat shock hsp70 proteins
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064108(11), NM_064109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064108 NCBI Caenorhabditis elegans F44E5.4 (F44E5.4) mRNA, complete cds. 11/11 A 
NM_064109 NCBI Caenorhabditis elegans F44E5.5 (F44E5.5) mRNA, complete cds. 11/11 A 
SNAP00000031910 ENSEMBL cdna:SNAP chromosome:CEL140:II:11757117:11759163:-1 11/11 None
SNAP00000031911 ENSEMBL cdna:SNAP chromosome:CEL140:II:11759610:11761656:1 11/11 None
GENEFINDER00000031919 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11757117:11759163:-1 11/11 None
GENEFINDER00000031921 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11759610:11761656:1 11/11 None
F44E5.4.1 ENSEMBL cdna:known chromosome:CEL140:II:11756532:11759163:-1 gene:F44E5.4 11/11 A 
F44E5.4.2 ENSEMBL cdna:known chromosome:CEL140:II:11757011:11759163:-1 gene:F44E5.4 11/11 A 
F44E5.5.1 ENSEMBL cdna:known chromosome:CEL140:II:11759586:11761762:1 gene:F44E5.5 11/11 A 
F44E5.5.2 ENSEMBL cdna:known chromosome:CEL140:II:11759586:11761951:1 gene:F44E5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11759606-11761653(+) 100.0 100.0
chrII:11757113-11759160(-) 100.0 100.0
Public Domain and Genome References
Gene Title Heat shock hsp70 proteins
Heat shock hsp70 proteins
Ensembl F44E5.4
F44E5.5
Entrez Gene 174805 Entrez gene
174806 Entrez gene
SwissProt Q9XTL8 EMBL-EBI
WormBase CE18679 Wormbase
CE18679 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1636055_AT Heat shock protein cognate 2 dm
DROSGENOME1:143192_AT Heat shock protein cognate 2 dm
Protein Similarities
Method ID Description E-Value
blast CAB05508 Hypothetical protein F44E5.5 [Caenorhabditis elegans] emb|CAB05507.1| Hypothetical protein F44E5.4 [Caenorhabditis elegans] ref|NP_496510.1| F44E5.5 [Caenorhabditis elegans] ref|NP_496509.1| F44E5.4 [Caenorhabditis elegans] 0.0
blast CAE67671 Hypothetical protein CBG13234 [Caenorhabditis briggsae] 0.0
blast CAE74314 Hypothetical protein CBG22024 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001023 EMBL-EBI Heat shock protein Hsp70 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190958_S_AT
ccaggtgtctcaattcaagtgtatgaaggtgaacgtgcaatgactcgtgacaatcatcgc
cttggaacattcgaattgtctggaattccacctgctccacgcggtgttccacaaattgaa
gtcacttttgatattgatgcaaatggaattctcaatgtgtcagctgaggataaatcaact
ggaaaatccaatcgaatcacaattcaaaatgagaaaggacggctgacacaatcagatatt
gatcgaatggttcatgaagctaaacaattcgaaaaggaagatggtgaacaacgggaacgt
gttcaggctcgtaatcaattagaagcatatgcattccaaatcaagcaggctcttgatgag
tattcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGGTGTCTCAATTCAAGTGTATG 229 271 1321 Antisense
GAAGGTGAACGTGCAATGACTCGTG 407 335 1345 Antisense
AATGACTCGTGACAATCATCGCCTT 335 163 1359 Antisense
ATCATCGCCTTGGAACATTCGAATT 360 29 1373 Antisense
GAATTGTCTGGAATTCCACCTGCTC 679 323 1393 Antisense
GGAATTCTCAATGTGTCAGCTGAGG 619 533 1465 Antisense
ATGAGAAAGGACGGCTGACACAATC 525 43 1529 Antisense
GAAGATGGTGAACAACGGGAACGTG 674 321 1597 Antisense
GGGAACGTGTTCAGGCTCGTAATCA 367 529 1613 Antisense
ATGCATTCCAAATCAAGCAGGCTCT 333 43 1649 Antisense
AAGCAGGCTCTTGATGAGTATTCAT 605 151 1663 Antisense
Sequence Source Affymetrix Proprietary Database