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[190957_at] glutathione S-transferase

Description F37B1.4 /REP_DB=WormBase Gene ID /WP=CE09991 /TR=Q93697 /GB=CAB02290.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_total > 48      4grp_total > 03      6grp_cgc > 18      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 846
1 2 3 4 range
A 156.5
(-2.1)
A 		125.1
(-2.4)
A 		52.3
(-3)
A 		736.1
(3)
P 		684
B 172.4
(-2.2)
A 		64.4
(-3)
A 		121.4
(-2.6)
A 		869.3
(3)
P 		805
C 186.8
(-1.6)
A 		23.7
(-3)
A 		117
(-2.2)
A 		731.8
(3)
P 		708
avr 171.9
(-2.1) 		71.1
(-3) 		96.9
(-2.8) 		779.1
(3) 		708

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 254
1 2 3 4 5 6 range
A 246
(3)
A 		152.5
(-0.2)
A 		98.1
(-2)
A 		69.7
(-3)
A 		144.3
(-0.5)
A 		228.5
(2.4)
P 		176
B 286
(2.1)
P 		197.8
(-0)
A 		75.3
(-3)
A 		89.5
(-2.7)
A 		172.3
(-0.7)
P 		323.7
(3)
P 		248
C 263
(1.6)
P 		179
(-0.6)
M 		86.5
(-3)
A 		134.6
(-1.7)
A 		128.1
(-1.9)
A 		316.1
(3)
P 		230
avr 265
(2.3) 		176.4
(-0.3) 		86.6
(-3) 		97.9
(-2.7) 		148.2
(-1.2) 		289.4
(3) 		203
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 178
1 2 3 4 range
A 57
(-0.2)
A 		27.1
(-2.1)
A 		13.7
(-3)
A 		107.8
(3)
P 		94
B 55
(-1.6)
A 		15.9
(-3)
A 		28.1
(-2.6)
A 		185.2
(3)
P 		169
C 61.8
(-0.2)
A 		6.8
(-3)
A 		40.8
(-1.3)
A 		123.4
(3)
P 		117
avr 57.9
(-1) 		16.6
(-3) 		27.5
(-2.5) 		138.8
(3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 45.4
(1.4)
A 		54.2
(2.8)
A 		21.4
(-2.4)
A 		17.7
(-3)
A 		43.6
(1.1)
A 		55.6
(3)
P 		38
B 99.5
(1.8)
P 		65.8
(-0.2)
A 		18.3
(-3)
A 		23.7
(-2.7)
A 		70
(0)
P 		120.7
(3)
P 		102
C 97.5
(2.4)
P 		54.6
(-0.7)
M 		22
(-3)
A 		27.1
(-2.6)
A 		41.4
(-1.6)
A 		105.8
(3)
P 		84
avr 80.8
(1.9) 		58.2
(0.1) 		20.6
(-3) 		22.8
(-2.8) 		51.7
(-0.5) 		94
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190957_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3311
Sequence Type Exemplar sequence
Representative Public ID F37B1.4 NCBI
Target Description F37B1.4 /REP_DB=WormBase Gene ID /WP=CE09991 /TR=Q93697 /GB=CAB02290.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064459(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064459 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-15) (gst-15) mRNA, complete cds. 11/11 None
SNAP00000041641 ENSEMBL cdna:SNAP chromosome:CEL140:II:13611727:13613039:-1 11/11 None
GENEFINDER00000041654 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13611727:13613039:-1 11/11 None
F37B1.4 ENSEMBL cdna:known chromosome:CEL140:II:13611727:13613039:-1 gene:F37B1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13611723-13613036(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-15
Ensembl F37B1.4
Entrez Gene 185410 Entrez gene
SwissProt Q93697 EMBL-EBI
WormBase CE09991 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02290 Hypothetical protein F37B1.4 [Caenorhabditis elegans] ref|NP_496860.1| Glutathione S-Transferase family member (gst-15) [Caenorhabditis elegans] 1.0E-122
blast CAE73253 Hypothetical protein CBG20669 [Caenorhabditis briggsae] 1.0E-97
blast CAB61107 Hypothetical protein Y53F4B.33 [Caenorhabditis elegans] ref|NP_497119.1| Glutathione S-Transferase family member (gst-39) [Caenorhabditis elegans] 3.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.5E-8
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.7E-16
Sequence
Target Sequence 
>C. ELEGANS:190957_AT
atctctcgcatactccatacgatgatattcggattccaatggccgatactgaagggaaat
gggagaaaatgagagacaaaaccccatttggtcagctcccagtactcaacgttgatggct
tcgacatcccccaatctgctgcaatttgtcgataccttgccaagaaatttggttatgccg
gaaaaactccagaagaagaagcgtgggcggacgccgttgtcgaccaattcaaagacttct
ccgttgcttttaaaacactcctttttgccacaagggccgggaaaccagaagaagaaatcc
tcaaaatccgctacgagattttcaatccagctcgagatgtctactttattcttctcaatc
gaattctcaaaaagagcaagtcaggttatttagttggtgatgggctcacatgggctgatc
tagttatagctgataatttgcacagtctggagaagcttcgagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCTCGCATACTCCATACGATGA 458 33 80 Antisense
AGCTCCCAGTACTCAACGTTGATGG 355 81 173 Antisense
ATCTGCTGCAATTTGTCGATACCTT 314 33 213 Antisense
AAGAAGCGTGGGCGGACGCCGTTGT 337 153 275 Antisense
TTAAAACACTCCTTTTTGCCACAAG 515 683 329 Antisense
TGCCACAAGGGCCGGGAAACCAGAA 89 587 345 Antisense
GAAGAAATCCTCAAAATCCGCTACG 117 339 370 Antisense
TCAATCCAGCTCGAGATGTCTACTT 559 633 401 Antisense
ATGTCTACTTTATTCTTCTCAATCG 54 49 416 Antisense
TGATGGGCTCACATGGGCTGATCTA 468 567 477 Antisense
GCACAGTCTGGAGAAGCTTCGAGCC 96 317 519 Antisense
Sequence Source Affymetrix Proprietary Database