[Home] | [Total List]

[190954_at] alcohol dehydrogenase

Description K12G11.4 /REP_DB=WormBase Gene ID /WP=CE12214 /TR=SW:O45687 /GB=CAB04603.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      6grp_highest_nonorm > 81      6grp_total > 41      4grp_total > 22      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 231.4
(3)
P 		73.6
(-1.6)
A 		25.6
(-3)
A 		205.7
(2.3)
P 		206
B 267.4
(3)
P 		60.1
(-2.9)
A 		55.5
(-3)
A 		244.3
(2.3)
P 		212
C 251.2
(2.7)
P 		89.5
(-1.7)
A 		39.6
(-3)
A 		263.1
(3)
P 		224
avr 250
(3) 		74.4
(-2) 		40.2
(-3) 		237.7
(2.6) 		210

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 258.1
(-1.5)
P 		299
(-0.4)
P 		425
(3)
P 		266.7
(-1.3)
P 		263
(-1.4)
P 		202.3
(-3)
P 		223
B 264.3
(-0.7)
P 		279.8
(0.3)
P 		325.6
(3)
P 		308.9
(2)
P 		225
(-3)
P 		235
(-2.4)
P 		101
C 243.8
(-0.2)
P 		313.6
(3)
P 		302.6
(2.5)
P 		260.7
(0.6)
P 		180.9
(-3)
P 		224.5
(-1)
P 		133
avr 255.4
(-1.4) 		297.5
(0.5) 		351.1
(3) 		278.8
(-0.3) 		223
(-2.9) 		220.6
(-3) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 84.2
(3)
P 		16
(-2.3)
A 		6.7
(-3)
A 		30.1
(-1.2)
P 		78
B 85.3
(3)
P 		14.8
(-2.8)
A 		12.9
(-3)
A 		52.1
(0.2)
P 		72
C 83.2
(3)
P 		25.7
(-2)
A 		13.8
(-3)
A 		44.4
(-0.4)
P 		69
avr 84.2
(3) 		18.8
(-2.4) 		11.1
(-3) 		42.2
(-0.4) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 47.6
(-3)
P 		106.3
(3)
P 		92.6
(1.6)
P 		67.6
(-1)
P 		79.4
(0.3)
P 		49.3
(-2.8)
P 		59
B 92
(2.5)
P 		93.1
(3)
P 		79.1
(-3)
P 		81.8
(-1.8)
P 		91.4
(2.3)
P 		87.6
(0.6)
P 		14
C 90.4
(2.3)
P 		95.7
(3)
P 		77
(0.4)
P 		52.4
(-3)
P 		58.5
(-2.2)
P 		75.2
(0.2)
P 		43
avr 76.7
(-1.2) 		98.4
(3) 		82.9
(0) 		67.3
(-3) 		76.4
(-1.2) 		70.7
(-2.3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13581
Sequence Type Exemplar sequence
Representative Public ID K12G11.4 NCBI
Target Description K12G11.4 /REP_DB=WormBase Gene ID /WP=CE12214 /TR=SW:O45687 /GB=CAB04603.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=alcohol dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073591 NCBI Caenorhabditis elegans SOrbitol DeHydrogenase family member (sodh-2) (sodh-2) mRNA, complete cds. 11/11 None
SNAP00000018967 ENSEMBL cdna:SNAP chromosome:CEL140:V:11892307:11893774:-1 11/11 None
GENEFINDER00000018976 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11892307:11893774:-1 11/11 None
K12G11.4 ENSEMBL cdna:known chromosome:CEL140:V:11892307:11893782:-1 gene:K12G11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11892306-11893774(-) 100.0 100.0
Public Domain and Genome References
Gene Title alcohol dehydrogenase
Gene Symbol sodh-2
Ensembl K12G11.4
Entrez Gene 179628 Entrez gene
SwissProt O45687 EMBL-EBI
WormBase CE12214 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4024 alcohol dehydrogenase activity, zinc-dependent inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04603 Hypothetical protein K12G11.4 [Caenorhabditis elegans] ref|NP_505992.1| SOrbitol DeHydrogenase family member (sodh-2) [Caenorhabditis elegans] sp|O45687|ADH2_CAEEL Probable alcohol dehydrogenase K12G11.4 0.0
blast CAE75274 Hypothetical protein CBG23239 [Caenorhabditis briggsae] 1.0E-149
blast CAB04604 Hypothetical protein K12G11.3 [Caenorhabditis elegans] ref|NP_505991.1| SOrbitol DeHydrogenase family member (sodh-1) [Caenorhabditis elegans] sp|Q17334|ADH1_CAEEL Alcohol dehydrogenase K12G11.3 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 5.4E-107
Sequence
Target Sequence 
>C. ELEGANS:190954_AT
gaatgacacaaatctcgcagcagctgctccagtattatgtggtggagtaactgcatataa
atccctgaaagcaacaaatgtgaaaccaggccaaatagttgtactaacgggtgctggagg
aggattaggatcttttggaattcaatacgcaaaagcaatgggaatgagagttgttgctgt
tgatcatattagcaaagaagatcactgcagaaatcttggagctgaatggttcgtcgatgc
ttttgataccccagacattgtggctcatattcgaaaattaacgaatggaggagcacatgg
tgttgttagttttgcagcagccaaaaagccaatggaatatgctttggaatatgtcagaaa
aagagggaccgtggtgtttgttggtcttccaaaagatggaacgattccccttgatacact
ttcactaatttgcaatgaaataactgtgaagggatcaattgttggatcacgcatggatgt
tgatgaagcaatcgattttattactcgtggaattgtgcatgttccaatagaacttgtaaa
actcgaagatgttccaagtgtctatcaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGACACAAATCTCGCAGCAGCT 265 329 444 Antisense
CGCAGCAGCTGCTCCAGTATTATGT 193 255 459 Antisense
GAGTAACTGCATATAAATCCCTGAA 444 397 488 Antisense
GTTGTACTAACGGGTGCTGGAGGAG 440 437 541 Antisense
GAGAGTTGTTGCTGTTGATCATATT 520 395 609 Antisense
GGTTCGTCGATGCTTTTGATACCCC 603 507 671 Antisense
GATACCCCAGACATTGTGGCTCATA 129 425 688 Antisense
GGTGTTGTTAGTTTTGCAGCAGCCA 205 501 742 Antisense
GACCGTGGTGTTTGTTGGTCTTCCA 101 383 810 Antisense
ATTCCCCTTGATACACTTTCACTAA 323 9 847 Antisense
AGATGTTCCAAGTGTCTATCAACGA 314 67 990 Antisense
Sequence Source Affymetrix Proprietary Database