[Home] | [Total List]

[190953_at] acyl-CoA dehydrogenase

Description F54D5.7 /REP_DB=WormBase Gene ID /WP=CE03411 /TR=SW:Q20772 /GB=CAA91333.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acyl-CoA dehydrogenase
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 21      6grp_total > 24      4grp_total > 05      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1730
1 2 3 4 range
A 1895
(-1.9)
P 		1698
(-2.7)
P 		1620.9
(-3)
P 		3123.5
(3)
P 		1503
B 2486.2
(0.5)
P 		1491.3
(-3)
P 		1731.3
(-2.2)
P 		3221.5
(3)
P 		1730
C 1980.1
(-1.4)
P 		1706.6
(-2.7)
P 		1634.3
(-3)
P 		2907.8
(3)
P 		1274
avr 2120.4
(-1) 		1632
(-3) 		1662.2
(-2.9) 		3084.3
(3) 		1452

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 979
1 2 3 4 5 6 range
A 1856.7
(3)
P 		1701.3
(2)
P 		1265.9
(-0.6)
P 		1362.6
(-0)
P 		878
(-3)
P 		1190.9
(-1.1)
P 		979
B 1399.7
(3)
P 		1215.5
(0.4)
P 		1352.9
(2.3)
P 		1080.5
(-1.6)
P 		1030
(-2.3)
P 		979.5
(-3)
P 		420
C 1702.4
(3)
P 		1190.8
(-2.1)
P 		1632.6
(2.3)
P 		1113.5
(-2.8)
P 		1130.4
(-2.7)
P 		1096.4
(-3)
P 		606
avr 1652.9
(3) 		1369.2
(0.3) 		1417.1
(0.8) 		1185.5
(-1.4) 		1012.8
(-3) 		1088.9
(-2.3) 		640
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 425
1 2 3 4 range
A 690
(3)
P 		368.6
(-3)
P 		423.7
(-2)
P 		457.2
(-1.3)
P 		321
B 792.8
(3)
P 		368.3
(-3)
P 		401.2
(-2.5)
P 		686.5
(1.5)
P 		425
C 655.5
(3)
P 		490.7
(-3)
P 		569.6
(-0.1)
P 		490.3
(-3)
P 		165
avr 712.8
(3) 		409.2
(-3) 		464.8
(-1.9) 		544.7
(-0.3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 342.3
(-1.6)
P 		605.1
(3)
P 		275.7
(-2.8)
P 		345.6
(-1.6)
P 		265
(-3)
P 		289.9
(-2.6)
P 		340
B 487
(3)
P 		404.6
(0.5)
P 		328.5
(-1.7)
P 		286.2
(-3)
P 		418.5
(1)
P 		365.2
(-0.6)
P 		201
C 631
(3)
P 		363.4
(-0.9)
P 		415.5
(-0.2)
P 		223.9
(-3)
P 		365.8
(-0.9)
P 		367
(-0.9)
P 		407
avr 486.8
(3) 		457.7
(2.1) 		339.9
(-1.4) 		285.2
(-3) 		349.8
(-1.1) 		340.7
(-1.3) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190953_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3459
Sequence Type Exemplar sequence
Representative Public ID F54D5.7 NCBI
Target Description F54D5.7 /REP_DB=WormBase Gene ID /WP=CE03411 /TR=SW:Q20772 /GB=CAA91333.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acyl-CoA dehydrogenase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064068 NCBI Caenorhabditis elegans F54D5.7 (F54D5.7) mRNA, complete cds. 11/11 None
SNAP00000004667 ENSEMBL cdna:SNAP chromosome:CEL140:II:11547430:11549090:1 11/11 None
GENEFINDER00000004680 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11547430:11549090:1 11/11 None
F54D5.7.2 ENSEMBL cdna:known chromosome:CEL140:II:11547403:11549185:1 gene:F54D5.7 11/11 None
F54D5.7.1 ENSEMBL cdna:known chromosome:CEL140:II:11547422:11549203:1 gene:F54D5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004669 2/11 Cross Hyb Matching Probes None
GENEFINDER00000004684 1/11 Cross Hyb Matching Probes None
F54D5.16 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11547426-11549087(+) 100.0 100.0
Public Domain and Genome References
Gene Title acyl-CoA dehydrogenase
Ensembl F54D5.7
Entrez Gene 174768 Entrez gene
SwissProt Q20772 EMBL-EBI
WormBase CE03411 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604251_AT similar to Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD) cfa
CANINE:1584157_AT similar to Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD) cfa
CANINE_2:CFA.12126.1.A1_AT similar to Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD) cfa
CANINE_2:CFA.19628.1.S1_S_AT similar to Glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD) cfa
DROSOPHILA_2:1637142_AT dm
DROSGENOME1:152078_AT dm
HG-U133_PLUS_2:208369_S_AT glutaryl-Coenzyme A dehydrogenase hs
HG-U133A:208369_S_AT glutaryl-Coenzyme A dehydrogenase hs
HG-FOCUS:208369_S_AT glutaryl-Coenzyme A dehydrogenase hs
HG-U133A_2:208369_S_AT glutaryl-Coenzyme A dehydrogenase hs
HG-U95AV2:1749_AT glutaryl-Coenzyme A dehydrogenase hs
HC-G110:1749_AT glutaryl-Coenzyme A dehydrogenase hs
HG-U133_PLUS_2:203500_AT glutaryl-Coenzyme A dehydrogenase hs
HG-U133A:203500_AT glutaryl-Coenzyme A dehydrogenase hs
HG-U133A_2:203500_AT glutaryl-Coenzyme A dehydrogenase hs
HU35KSUBD:RC_T66189_S_AT glutaryl-Coenzyme A dehydrogenase hs
HUGENEFL:U69141_AT glutaryl-Coenzyme A dehydrogenase hs
U133_X3P:G4503942_3P_A_AT glutaryl-Coenzyme A dehydrogenase hs
HG-U95AV2:33314_AT glutaryl-Coenzyme A dehydrogenase hs
MU11KSUBA:U18992_S_AT glutaryl-Coenzyme A dehydrogenase mm
MG-U74AV2:160194_AT glutaryl-Coenzyme A dehydrogenase mm
MOE430A:1448717_AT glutaryl-Coenzyme A dehydrogenase mm
MOUSE430A_2:1448717_AT glutaryl-Coenzyme A dehydrogenase mm
MOUSE430_2:1448717_AT glutaryl-Coenzyme A dehydrogenase mm
MG-U74BV2:106478_AT Glutaryl-Coenzyme A dehydrogenase (Gcdh), mRNA mm
MU19KSUBB:TC32535_AT Glutaryl-Coenzyme A dehydrogenase (Gcdh), mRNA mm
RG-U34B:RC_AI029435_AT glutaryl-Coenzyme A dehydrogenase (predicted) rn
RG-U34C:RC_AI105435_AT glutaryl-Coenzyme A dehydrogenase (predicted) rn
RAE230A:1388788_AT glutaryl-Coenzyme A dehydrogenase (predicted) rn
RAT230_2:1388788_AT glutaryl-Coenzyme A dehydrogenase (predicted) rn
RAE230B:1397526_AT glutaryl-Coenzyme A dehydrogenase (predicted) rn
RAT230_2:1397526_AT glutaryl-Coenzyme A dehydrogenase (predicted) rn
RAE230B:1380526_AT glutaryl-Coenzyme A dehydrogenase (predicted) rn
RAT230_2:1380526_AT glutaryl-Coenzyme A dehydrogenase (predicted) rn
RG-U34B:RC_AI030545_AT Glutaryl-Coenzyme A dehydrogenase (predicted) rn
RG-U34C:RC_AI175284_AT Glutaryl-Coenzyme A dehydrogenase (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3995 acyl-CoA dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91333 Hypothetical protein F54D5.7 [Caenorhabditis elegans] ref|NP_496469.1| F54D5.7 [Caenorhabditis elegans] sp|Q20772|GCDH_CAEEL Probable glutaryl-CoA dehydrogenase, mitochondrial precursor (GCD) 0.0
blast CAE59477 Hypothetical protein CBG02861 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec ACDM_DROME (Q9VSA3) Probable acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 1.9E-49
Pfam IPR006091 EMBL-EBI Acyl-CoA dehydrogenase, central domain 2.8E-20
Pfam IPR006092 EMBL-EBI Acyl-CoA dehydrogenase, N-terminal 1.7E-13
Sequence
Target Sequence 
>C. ELEGANS:190953_AT
agagcctcgatcactggacagattgcaatggatgatgttccagtaccagaggagaatctt
ctcccgaacgctgaagggcttcaaggaccattcggatgcctgaataacgcacgcctcgga
atcgcgtggggtgctctcggagcagctgaagaatgcttccatctcgcacgccagtacact
ttggatcgccaacagttcggacgcccacttgcacagaatcagctgatgcagttgaagatg
gctgatatgttaactgaaatctctttgggtcttcaaggatgccttcgtgtgtcccgcctg
aaagatgagggaaaagttcaatcagagcagatctcgattatcaaaagaaactcgtgtgga
aaggctctcgaggtggcacgaaaggcgagagatatgcttggtggaaatggaattgtggat
gagtaccatattatgagacatatggtgaatttggagacagttaacacttatgaaggaaca
cacgatgtacatgctctgatccttggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCCTCGATCACTGGACAGATTG 703 69 703 Antisense
TTCTCCCGAACGCTGAAGGGCTTCA 420 675 761 Antisense
TCGGATGCCTGAATAACGCACGCCT 574 601 794 Antisense
GCACGCCTCGGAATCGCGTGGGGTG 591 315 811 Antisense
GCTGAAGAATGCTTCCATCTCGCAC 84 297 847 Antisense
CGCACGCCAGTACACTTTGGATCGC 311 253 867 Antisense
TTTGGATCGCCAACAGTTCGGACGC 16 667 882 Antisense
CGCCCACTTGCACAGAATCAGCTGA 679 255 904 Antisense
CTTTGGGTCTTCAAGGATGCCTTCG 490 223 965 Antisense
GTGGAAAGGCTCTCGAGGTGGCACG 654 489 1058 Antisense
ATGTACATGCTCTGATCCTTGGAAG 651 47 1187 Antisense
Sequence Source Affymetrix Proprietary Database