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[190952_at] 7TM chemoreceptor, srd family

Description T09D3.1 /REP_DB=WormBase Gene ID /WP=CE25110 /GEN=srd-9 /TR=Q9GS01 /GB=AAG24199.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 20      4grp_total > 28      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 30.2
(-0.7)
A 		22.6
(-1.9)
A 		15.7
(-3)
A 		53.7
(3)
A 		38
B 27.2
(-0.6)
A 		47.1
(3)
A 		15.1
(-2.8)
A 		13.9
(-3)
A 		33
C 32.6
(2.5)
A 		9.8
(-1.7)
A 		2.6
(-3)
A 		35.1
(3)
A 		33
avr 30
(1.9) 		26.5
(1) 		11.1
(-3) 		34.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 16
(-1.6)
A 		34.5
(0.3)
A 		59.5
(3)
P 		3.2
(-3)
A 		28.9
(-0.3)
A 		20.9
(-1.1)
A 		56
B 39.4
(2.1)
A 		19.2
(-0.7)
A 		26.2
(0.3)
A 		45.8
(3)
A 		2.2
(-3)
A 		32.4
(1.2)
A 		44
C 3.8
(-3)
A 		70.4
(3)
A 		24.4
(-1.1)
A 		41.2
(0.4)
A 		3.5
(-3)
A 		14.7
(-2)
A 		67
avr 19.7
(-1.4) 		41.4
(3) 		36.7
(2.1) 		30.1
(0.7) 		11.5
(-3) 		22.7
(-0.8) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11
(3)
A 		4.9
(-2.3)
A 		4.1
(-3)
A 		7.9
(0.3)
A 		7
B 8.7
(1)
A 		11.6
(3)
A 		3.5
(-2.7)
A 		3
(-3)
A 		9
C 10.8
(3)
A 		2.8
(-1.8)
A 		0.9
(-3)
A 		5.9
(0)
A 		10
avr 10.2
(3) 		6.4
(-0.1) 		2.8
(-3) 		5.6
(-0.7) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3
(-1.9)
A 		12.3
(2.7)
A 		13
(3)
P 		0.8
(-3)
A 		8.7
(0.9)
A 		5.1
(-0.9)
A 		12
B 13.7
(3)
A 		6.4
(-0.4)
A 		6.4
(-0.4)
A 		12.1
(2.3)
A 		0.9
(-3)
A 		12.1
(2.3)
A 		13
C 1.4
(-2.9)
A 		21.5
(3)
A 		6.2
(-1.5)
A 		8.3
(-0.9)
A 		1.1
(-3)
A 		4.9
(-1.9)
A 		20
avr 6
(-1.5) 		13.4
(3) 		8.5
(-0) 		7.1
(-0.9) 		3.6
(-3) 		7.4
(-0.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190952_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12294
Sequence Type Exemplar sequence
Representative Public ID T09D3.1 NCBI
Target Description T09D3.1 /REP_DB=WormBase Gene ID /WP=CE25110 /GEN=srd-9 /TR=Q9GS01 /GB=AAG24199.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072025(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072025 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-9) (srd-9) mRNA, complete cds. 11/11 None
SNAP00000010228 ENSEMBL cdna:SNAP chromosome:CEL140:V:5351595:5352879:1 11/11 None
GENEFINDER00000010236 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5351595:5352879:1 11/11 None
T09D3.1 ENSEMBL cdna:known chromosome:CEL140:V:5351595:5352879:1 gene:T09D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5351594-5352879(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-9
Ensembl T09D3.1
Entrez Gene 191799 Entrez gene
SwissProt Q9GS01 EMBL-EBI
WormBase CE25110 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504426 Serpentine Receptor, class D (delta) family member (srd-9) [Caenorhabditis elegans] gb|AAG24199.1| Serpentine receptor, class d (delta) protein 9 [Caenorhabditis elegans] 0.0
blast T34447 hypothetical protein T09D3.1 - Caenorhabditis elegans 0.0
blast CAE64638 Hypothetical protein CBG09400 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504426.1 7 9-31,44-66,86-108,128-150,183-205,235-257,261-283
T09D3.1 7 9-31,44-66,86-108,128-150,183-205,235-257,261-283
SNAP00000010228 7 9-31,44-66,86-108,128-150,183-205,235-257,261-283
GENEFINDER00000010236 7 9-31,44-66,86-108,128-150,183-205,235-257,261-283
Sequence
Target Sequence 
>C. ELEGANS:190952_AT
atacattccatcattcactcagttcattgtgctaatgttcaccgccgcggatccttattt
gatttttggaatgttgaaatcaaagttcccagattatacatttgaaatttcaactgttac
gggaatatccgatgcattatctccagctgctacattttcaatcctaaacatgacagttcc
agtttttgcgatttacactgcaatccttgtatttcgaaggaaaattctttgccgtctcgg
gaaaaacaccgagaatttacgttctgaaacaaaatccatccacaagcaactgttgagagc
attgacgctgcaagcttgtcttccagttttatttgttggcggagtattctgcttttttat
ccaagcaatccggctgattacccacccaatttttgaatgtctgatatgtgcaattcctgc
tccaatcccacttttatcatctattatttcactttaccatatccgaccctatcgccggga
aatcttgcgtatctttacaagagtaaccattcctattccacaaattgaaccggcttcttc
tgcagttgctctcgctgctaaacataaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACATTCCATCATTCACTCAGTTC 132 25 414 Antisense
AATATCCGATGCATTATCTCCAGCT 573 173 537 Antisense
TCCAGCTGCTACATTTTCAATCCTA 455 589 555 Antisense
GAAGGAAAATTCTTTGCCGTCTCGG 657 331 629 Antisense
GCTGCAAGCTTGTCTTCCAGTTTTA 51 297 720 Antisense
GTTGGCGGAGTATTCTGCTTTTTTA 21 437 748 Antisense
TCCAATCCCACTTTTATCATCTATT 281 587 834 Antisense
TTATTTCACTTTACCATATCCGACC 515 677 857 Antisense
CGACCCTATCGCCGGGAAATCTTGC 700 249 877 Antisense
ACAAGAGTAACCATTCCTATTCCAC 667 89 910 Antisense
AGTTGCTCTCGCTGCTAAACATAAA 437 63 957 Antisense
Sequence Source Affymetrix Proprietary Database