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[190951_at] Transthyretin-like family

Description C12D8.4 /REP_DB=WormBase Gene ID /WP=CE05268 /TR=Q17937 /GB=CAA98234.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_total > 78      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2517
1 2 3 4 range
A 3.2
(-3)
A 		58.6
(-2.9)
A 		13.7
(-3)
A 		2466.2
(3)
P 		2463
B 25.3
(-2.9)
A 		7.4
(-3)
A 		2.1
(-3)
A 		2507.3
(3)
P 		2505
C 30.9
(-2.9)
A 		10.7
(-3)
A 		6.5
(-3)
A 		2519.5
(3)
P 		2513
avr 19.8
(-3) 		25.6
(-3) 		7.4
(-3) 		2497.7
(3) 		2490

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3675
1 2 3 4 5 6 range
A 5.7
(-3)
A 		15.1
(-3)
A 		24
(-3)
A 		132.9
(-2.7)
P 		1094.7
(-0.7)
P 		2860.9
(3)
P 		2855
B 4
(-3)
A 		1.5
(-3)
A 		4.1
(-3)
A 		66.6
(-2.9)
A 		1449.6
(-0.3)
P 		3244
(3)
P 		3243
C 4.1
(-3)
A 		27.2
(-3)
A 		19.6
(-3)
A 		101.9
(-2.8)
P 		1208.8
(-1)
P 		3676.2
(3)
P 		3672
avr 4.6
(-3) 		14.6
(-3) 		15.9
(-3) 		100.5
(-2.8) 		1251
(-0.7) 		3260.4
(3) 		3256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 534
1 2 3 4 range
A 1.2
(-3)
A 		12.7
(-2.8)
A 		3.6
(-3)
A 		361
(3)
P 		360
B 8.1
(-2.9)
A 		1.8
(-3)
A 		0.5
(-3)
A 		534.3
(3)
P 		534
C 10.2
(-2.9)
A 		3.1
(-3)
A 		2.3
(-3)
A 		424.8
(3)
P 		423
avr 6.5
(-2.9) 		5.9
(-2.9) 		2.1
(-3) 		440
(3) 		438

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1230
1 2 3 4 5 6 range
A 1
(-3)
A 		5.4
(-3)
A 		5.2
(-3)
A 		33.7
(-2.7)
P 		330.3
(-0.2)
P 		696.5
(3)
P 		696
B 1.4
(-3)
A 		0.5
(-3)
A 		1
(-3)
A 		17.6
(-2.9)
A 		589
(-0.1)
P 		1209.7
(3)
P 		1209
C 1.5
(-3)
A 		8.3
(-3)
A 		5
(-3)
A 		20.5
(-2.9)
P 		391.1
(-1.1)
P 		1230.6
(3)
P 		1229
avr 1.3
(-3) 		4.7
(-3) 		3.7
(-3) 		23.9
(-2.9) 		436.8
(-0.5) 		1045.6
(3) 		1044
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12297
Sequence Type Exemplar sequence
Representative Public ID C12D8.4 NCBI
Target Description C12D8.4 /REP_DB=WormBase Gene ID /WP=CE05268 /TR=Q17937 /GB=CAA98234.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073229 NCBI Caenorhabditis elegans C12D8.4 (C12D8.4) mRNA, complete cds. 11/11 None
SNAP00000020997 ENSEMBL cdna:SNAP chromosome:CEL140:V:10229465:10230010:-1 11/11 None
C12D8.4 ENSEMBL cdna:known chromosome:CEL140:V:10229465:10230010:-1 gene:C12D8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021016 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10229464-10230010(-) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl C12D8.4
Entrez Gene 182540 Entrez gene
SwissProt Q17937 EMBL-EBI
WormBase CE05268 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98234 Hypothetical protein C12D8.4 [Caenorhabditis elegans] ref|NP_505630.1| C12D8.4 [Caenorhabditis elegans] 2.0E-78
blast CAE64764 Hypothetical protein CBG09554 [Caenorhabditis briggsae] 2.0E-51
blast CAA99910 Hypothetical protein R90.2 [Caenorhabditis elegans] ref|NP_506225.1| R90.2 [Caenorhabditis elegans] 2.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 6.1E-69
Sequence
Target Sequence 
>C. ELEGANS:190951_AT
ggagctctccatgtttaaaattgtgtttgttttcgctcttttaaacacttcaaatgccct
tcttggtatgggaagaaaacaatcagtatcagttactggtcgacttacttgcttgggaaa
acctgcagaaggtgtgaagattaaactgtatgaaaaggagaaaatcaaggacataaaaat
ggatcaaacgtataccgatgcgaatggagtattcacagtttccggatacaagacagaaat
tacaaatatcgatccaaaggtgaacatatatcataaatgcaatacaattggtctatgcta
ccaaaagtttggaattacaattcctgacaactttatatcaattggttcgattccacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCTCTCCATGTTTAAAATTGTG 558 515 15 Antisense
TAAAATTGTGTTTGTTTTCGCTCTT 697 639 30 Antisense
TTTCGCTCTTTTAAACACTTCAAAT 373 671 45 Antisense
ACACTTCAAATGCCCTTCTTGGTAT 699 107 59 Antisense
GTATCAGTTACTGGTCGACTTACTT 86 447 100 Antisense
CGACTTACTTGCTTGGGAAAACCTG 697 249 115 Antisense
GGATCAAACGTATACCGATGCGAAT 650 509 195 Antisense
ATGGAGTATTCACAGTTTCCGGATA 673 49 218 Antisense
TGCAATACAATTGGTCTATGCTACC 236 577 292 Antisense
TTACAATTCCTGACAACTTTATATC 109 685 329 Antisense
ATATCAATTGGTTCGATTCCACAGA 404 19 349 Antisense
Sequence Source Affymetrix Proprietary Database