[Home] | [Total List]

[190949_at] Ribosomal protein S24

Description T26G10.3 /REP_DB=WormBase Gene ID /WP=CE00339 /TR=SW:P34582 /GB=CAA82363.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein S24
Cluster 6grp_total > 0      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 5.7
(-3)
A 		8.4
(-2.7)
A 		9.2
(-2.6)
A 		56.4
(3)
A 		51
B 5
(-1.2)
A 		4.5
(-3)
A 		5.8
(1.6)
A 		6.2
(3)
A 		2
C 8.9
(-0.5)
A 		8.3
(-0.8)
A 		4
(-3)
A 		15.6
(3)
A 		12
avr 6.5
(-2.9) 		7.1
(-2.8) 		6.3
(-3) 		26.1
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 7.5
(-0.1)
A 		4.9
(-2.8)
A 		5.1
(-2.6)
A 		10.5
(3)
A 		4.9
(-2.8)
A 		4.7
(-3)
A 		6
B 8.7
(-0.9)
A 		4.1
(-3)
A 		4.4
(-2.9)
A 		10.9
(0.2)
A 		6.3
(-2)
A 		17
(3)
A 		13
C 4
(-3)
A 		26.4
(3)
A 		4.6
(-2.8)
A 		4.3
(-2.9)
A 		6.3
(-2.4)
A 		5.4
(-2.6)
A 		22
avr 6.7
(-1.3) 		11.8
(3) 		4.7
(-3) 		8.6
(0.3) 		5.8
(-2.1) 		9
(0.6) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.1
(-2.7)
A 		1.8
(-3)
A 		2.4
(-2.4)
A 		8.3
(3)
A 		7
B 1.6
(3)
A 		1.1
(-3)
A 		1.3
(-0.6)
A 		1.3
(-0.6)
A 		1
C 2.9
(3)
A 		2.4
(1)
A 		1.4
(-3)
A 		2.6
(1.8)
A 		2
avr 2.2
(-1.8) 		1.8
(-2.8) 		1.7
(-3) 		4.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.4
(-1.9)
A 		1.8
(-0.4)
A 		1.1
(-3)
A 		2.7
(3)
A 		1.5
(-1.5)
A 		1.1
(-3)
A 		2
B 3
(-0.8)
A 		1.4
(-2.7)
A 		1.1
(-3)
A 		2.9
(-0.9)
A 		2.6
(-1.3)
A 		6.3
(3)
A 		5
C 1.5
(-2.5)
A 		8.1
(3)
A 		1.2
(-2.8)
A 		0.9
(-3)
A 		2
(-2.1)
A 		1.8
(-2.3)
A 		7
avr 2
(-1) 		3.8
(3) 		1.1
(-3) 		2.2
(-0.6) 		2
(-1) 		3.1
(1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190949_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6465
Sequence Type Exemplar sequence
Representative Public ID T26G10.3 NCBI
Target Description T26G10.3 /REP_DB=WormBase Gene ID /WP=CE00339 /TR=SW:P34582 /GB=CAA82363.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ribosomal protein S24
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066669 NCBI Caenorhabditis elegans T26G10.3 (T26G10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000004823 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9409787:9413336:-1 11/11 None
SNAP00000004814 ENSEMBL cdna:SNAP chromosome:CEL140:III:9413015:9413336:-1 11/11 None
T26G10.3 ENSEMBL cdna:known chromosome:CEL140:III:9412750:9413336:-1 gene:T26G10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9412745-9413332(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ribosomal protein S24
Ensembl T26G10.3
Entrez Gene 188943 Entrez gene
SwissProt P34582 EMBL-EBI
WormBase CE00339 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA82363 Hypothetical protein T26G10.3 [Caenorhabditis elegans] ref|NP_499070.1| T26G10.3 [Caenorhabditis elegans] sp|P34582|YN23_CAEEL Hypothetical protein T26G10.3 in chromosome III 2.0E-45
blast CAA82363 Hypothetical protein T26G10.3 [Caenorhabditis elegans] ref|NP_499070.1| T26G10.3 [Caenorhabditis elegans] sp|P34582|YN23_CAEEL Hypothetical protein T26G10.3 in chromosome III 2.0E-42
blast CAA82363 Hypothetical protein T26G10.3 [Caenorhabditis elegans] ref|NP_499070.1| T26G10.3 [Caenorhabditis elegans] sp|P34582|YN23_CAEEL Hypothetical protein T26G10.3 in chromosome III 4.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001976 EMBL-EBI Ribosomal protein S24e 3.8E-45
Sequence
Target Sequence 
>C. ELEGANS:190949_AT
tggtagctgaagtgatcctcccaggacgcccaactaccctaaaggcggatatccgtgaga
agatcgccaatttttataatatcaatccagacacaatggcaaagaatacgccgttgtcac
aagatgataaggttgccaagactgtggagcagcggagaaaggatgcagccgctcacaaag
aagcatataatgctatgccggaagccgagaggaggcatctcaactctgagaagtatgcca
atcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTAGCTGAAGTGATCCTCCCAGG 48 553 14 Antisense
GCCCAACTACCCTAAAGGCGGATAT 136 283 41 Antisense
CCGTGAGAAGATCGCCAATTTTTAT 77 265 66 Antisense
ATATCAATCCAGACACAATGGCAAA 698 19 92 Antisense
GGCAAAGAATACGCCGTTGTCACAA 581 529 111 Antisense
GGTTGCCAAGACTGTGGAGCAGCGG 560 507 144 Antisense
CGGAGAAAGGATGCAGCCGCTCACA 293 243 166 Antisense
GCAGCCGCTCACAAAGAAGCATATA 602 313 178 Antisense
AATGCTATGCCGGAAGCCGAGAGGA 274 165 202 Antisense
GCCGAGAGGAGGCATCTCAACTCTG 153 285 217 Antisense
CAACTCTGAGAAGTATGCCAATCGG 309 189 234 Antisense
Sequence Source Affymetrix Proprietary Database