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[190948_at] Mouse YSPL-1 protein like

Description C51E3.6 /REP_DB=WormBase Gene ID /WP=CE08939 /TR=Q18771 /GB=CAB01641.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Mouse YSPL-1 protein like
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 91      6grp_total > 94      4grp_total > 36      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 200.7
(-3)
P 		296.7
(3)
P 		216.7
(-2)
P 		223.3
(-1.6)
P 		96
B 215.6
(2.8)
P 		216.7
(3)
P 		184.5
(-3)
P 		215.3
(2.7)
P 		32
C 239.4
(3)
P 		212.8
(-1.9)
P 		212.1
(-2)
P 		206.9
(-3)
P 		33
avr 218.6
(-0.7) 		242.1
(3) 		204.4
(-3) 		215.2
(-1.3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 148.5
(-2.7)
P 		163.7
(-2.3)
P 		133.8
(-3)
P 		227.1
(-0.9)
P 		394.6
(3)
P 		271.9
(0.2)
P 		261
B 174.2
(-2.1)
P 		152.5
(-2.6)
P 		135.7
(-3)
P 		210.3
(-1.2)
P 		384.2
(3)
P 		347.8
(2.1)
P 		249
C 182.5
(-2.2)
P 		192.3
(-1.9)
P 		158.8
(-3)
P 		250.8
(0.1)
P 		335.6
(3)
P 		289.3
(1.4)
P 		177
avr 168.4
(-2.3) 		169.5
(-2.3) 		142.8
(-3) 		229.4
(-0.7) 		371.5
(3) 		303
(1.2) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 73.1
(3)
P 		64.4
(1.7)
P 		56.6
(0.5)
P 		32.7
(-3)
P 		40
B 68.8
(3)
P 		53.5
(-0.5)
P 		42.7
(-3)
P 		45.9
(-2.3)
P 		26
C 79.3
(3)
P 		61.2
(0.6)
P 		73.9
(2.3)
P 		34.9
(-3)
P 		44
avr 73.7
(3) 		59.7
(0.7) 		57.7
(0.3) 		37.8
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 27.4
(-3)
P 		58.2
(-1)
P 		29.1
(-2.9)
P 		57.6
(-1)
P 		119.1
(3)
P 		66.2
(-0.5)
P 		92
B 60.6
(-1.7)
P 		50.8
(-2.1)
P 		32.9
(-3)
P 		55.7
(-1.9)
P 		156.1
(3)
P 		129.7
(1.7)
P 		123
C 67.6
(-0.6)
P 		58.7
(-1.4)
P 		40.4
(-3)
P 		50.4
(-2.1)
P 		108.6
(3)
P 		96.9
(2)
P 		68
avr 51.9
(-1.9) 		55.9
(-1.6) 		34.1
(-3) 		54.6
(-1.7) 		127.9
(3) 		97.6
(1.1) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11489
Sequence Type Exemplar sequence
Representative Public ID C51E3.6 NCBI
Target Description C51E3.6 /REP_DB=WormBase Gene ID /WP=CE08939 /TR=Q18771 /GB=CAB01641.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Mouse YSPL-1 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073212(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073212 NCBI Caenorhabditis elegans C51E3.6 (C51E3.6) mRNA, complete cds. 11/11 None
SNAP00000031203 ENSEMBL cdna:SNAP chromosome:CEL140:V:10166841:10169037:-1 11/11 None
GENEFINDER00000031208 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10166274:10169037:-1 11/11 None
C51E3.6 ENSEMBL cdna:known chromosome:CEL140:V:10166841:10169037:-1 gene:C51E3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10166840-10169037(-) 100.0 100.0
Public Domain and Genome References
Gene Title Mouse YSPL-1 protein like
Ensembl C51E3.6
Entrez Gene 183708 Entrez gene
SwissProt Q18771 EMBL-EBI
WormBase CE08939 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19245_AT xanthine/uracil permease family protein at
ATH1-121501:263314_AT xanthine/uracil permease family protein at
CANINE:1595136_AT solute carrier family 23 (nucleobase transporters), member 2 cfa
CANINE:1582755_AT solute carrier family 23 (nucleobase transporters), member 2 cfa
CANINE_2:CFA.202.1.S1_AT solute carrier family 23 (nucleobase transporters), member 2 cfa
CANINE_2:CFAAFFX.10036.1.S1_AT solute carrier family 23 (nucleobase transporters), member 2 cfa
CANINE_2:CFAAFFX.10036.1.S1_S_AT solute carrier family 23 (nucleobase transporters), member 2 cfa
CHICKEN:GGA.10257.2.S1_A_AT similar to Solute carrier family 23, member 2 (Sodium-dependent vitamin C transporter 2) (hSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) (Nucleobase transporter-like 1 protein) gga
CHICKEN:GGA.7071.1.S1_AT similar to Solute carrier family 23, member 2 (Sodium-dependent vitamin C transporter 2) (hSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) (Nucleobase transporter-like 1 protein) gga
CHICKEN:GGAAFFX.24870.1.S1_S_AT similar to Solute carrier family 23, member 2 (Sodium-dependent vitamin C transporter 2) (hSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) (Nucleobase transporter-like 1 protein) gga
HG-U133A:209237_S_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-U133A_2:209237_S_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-U133_PLUS_2:209237_S_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-U133_PLUS_2:211572_S_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-U133A:211572_S_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-U133A_2:211572_S_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HU35KSUBD:RC_N23756_S_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HUGENEFL:D87075_AT solute carrier family 23 (nucleobase transporters), member 2 hs
U133_X3P:G8886523_3P_A_AT solute carrier family 23 (nucleobase transporters), member 2 hs
U133_X3P:G4206717_3P_A_AT solute carrier family 23 (nucleobase transporters), member 2 hs
U133_X3P:HS2.82042.2.S1_3P_AT solute carrier family 23 (nucleobase transporters), member 2 hs
U133_X3P:HS.82042.0.S3_3P_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-U133_PLUS_2:1554692_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-U133A_2:209236_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-FOCUS:209236_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-U133_PLUS_2:209236_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-U133A:209236_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HG-U95AV2:38122_AT solute carrier family 23 (nucleobase transporters), member 2 hs
HU35KSUBD:RC_AA358302_AT Solute carrier family 23 (nucleobase transporters), member 2 hs
MU11KSUBA:AA185385_S_AT solute carrier family 23 (nucleobase transporters), member 2 mm
MG-U74AV2:104267_AT solute carrier family 23 (nucleobase transporters), member 2 mm
MOE430A:1417329_AT solute carrier family 23 (nucleobase transporters), member 2 mm
MOUSE430A_2:1417329_AT solute carrier family 23 (nucleobase transporters), member 2 mm
MOUSE430_2:1417329_AT solute carrier family 23 (nucleobase transporters), member 2 mm
MOE430A:1417330_AT solute carrier family 23 (nucleobase transporters), member 2 mm
MOUSE430A_2:1417330_AT solute carrier family 23 (nucleobase transporters), member 2 mm
MOUSE430_2:1417330_AT solute carrier family 23 (nucleobase transporters), member 2 mm
MOE430B:1442983_AT Sodium-dependent vitamin C transporter type 2 (Slc23a1) mm
MOUSE430_2:1442983_AT Sodium-dependent vitamin C transporter type 2 (Slc23a1) mm
MOE430B:1445589_AT Sodium-dependent vitamin C transporter type 2 (Slc23a1) mm
MOUSE430_2:1445589_AT Sodium-dependent vitamin C transporter type 2 (Slc23a1) mm
RAE230A:1369378_AT solute carrier family 23 (nucleobase transporters), member 2 rn
RAT230_2:1369378_AT solute carrier family 23 (nucleobase transporters), member 2 rn
RAE230B:1380167_AT Solute carrier family 23 (nucleobase transporters), member 2 rn
RAT230_2:1380167_AT Solute carrier family 23 (nucleobase transporters), member 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01641 Hypothetical protein C51E3.6 [Caenorhabditis elegans] ref|NP_505613.1| C51E3.6 [Caenorhabditis elegans] 0.0
blast CAE64747 Hypothetical protein CBG09535 [Caenorhabditis briggsae] 0.0
blast CAE72821 Hypothetical protein CBG20102 [Caenorhabditis briggsae] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505613.1 11 31-53,74-96,135-157,164-182,192-210,231-253,292-314,378-400,405-424,436-455,470-492
C51E3.6 11 31-53,74-96,135-157,164-182,192-210,231-253,292-314,378-400,405-424,436-455,470-492
SNAP00000031203 11 31-53,74-96,135-157,164-182,192-210,231-253,292-314,378-400,405-424,436-455,470-492
GENEFINDER00000031208 13 31-53,74-96,135-157,164-182,192-210,231-253,292-314,378-400,405-424,436-455,470-492,532-554,558-580
Sequence
Target Sequence 
>C. ELEGANS:190948_AT
cagggcttcttggtcctggagttggaatgactacacatactgaaaacattggagttattg
gtgttacaagagttgcttctcgttggactatggttatggctggagtttttcttattatcc
ttggactaatcactaaaattggagcacttctctcaacaattccagatcctcttgttggtg
gagttcttgcttcttcaatggcaatggtcgtcggtgtagctgtgtctaatcttcaaacag
ttgacatgacactctcccgtaacatgggaatttttggattttccatgatgtttggtctca
ttgtgccaaaatatttcaagctctttccagtagacaccgattggggatggttcaatcaaa
ttctcaacgtattacttcagatgcccatgtttgtaggagccctttgtgcttgtattttag
ataattcaattggaggagcaacacgcgaacaacgaggtcttcgtgctcgaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGGCTTCTTGGTCCTGGAGTTGG 665 205 1052 Antisense
GTTGCTTCTCGTTGGACTATGGTTA 526 439 1123 Antisense
GAGCACTTCTCTCAACAATTCCAGA 104 391 1193 Antisense
TTGGTGGAGTTCTTGCTTCTTCAAT 9 709 1226 Antisense
GGCAATGGTCGTCGGTGTAGCTGTG 171 535 1251 Antisense
AAACAGTTGACATGACACTCTCCCG 447 129 1286 Antisense
AAGCTCTTTCCAGTAGACACCGATT 387 149 1369 Antisense
TCAACGTATTACTTCAGATGCCCAT 197 631 1415 Antisense
AGATGCCCATGTTTGTAGGAGCCCT 619 65 1430 Antisense
GTAGGAGCCCTTTGTGCTTGTATTT 61 457 1444 Antisense
ACAACGAGGTCTTCGTGCTCGAGGC 338 113 1500 Antisense
Sequence Source Affymetrix Proprietary Database