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[190947_s_at]

Description Y39A1A.15C /REP_DB=WormBase Gene ID /WP=CE20232 /TR=Q9XX09 /GB=CAA21032.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ank repeat (2 domains)
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 29      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 71      6grp_total > 38      4grp_total > 21      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 305.1
(1)
P 		259.8
(-0.7)
P 		197.8
(-3)
P 		358.7
(3)
P 		161
B 378.9
(3)
P 		258.4
(-2.5)
P 		248.1
(-3)
P 		346.2
(1.5)
P 		131
C 343.6
(1.2)
P 		295
(-0.4)
P 		213.8
(-3)
P 		398.6
(3)
P 		185
avr 342.5
(2) 		271.1
(-0.9) 		219.9
(-3) 		367.8
(3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 368
(3)
P 		356.9
(2.6)
P 		184.8
(-3)
P 		291.5
(0.5)
P 		326.8
(1.7)
P 		354.7
(2.6)
P 		183
B 326.2
(3)
P 		293.6
(-0.7)
P 		281.9
(-2)
P 		273.4
(-3)
P 		292.9
(-0.8)
P 		320.7
(2.4)
P 		53
C 342.8
(2.5)
P 		350.9
(3)
P 		314.8
(0.8)
P 		252.2
(-3)
P 		278.2
(-1.4)
P 		302.2
(0)
P 		99
avr 345.7
(3) 		333.8
(2.2) 		260.5
(-3) 		272.4
(-2.2) 		299.3
(-0.3) 		325.9
(1.6) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 111.1
(3)
P 		56.4
(-2.5)
P 		51.7
(-3)
P 		52.5
(-2.9)
P 		59
B 120.8
(3)
P 		63.8
(-2.4)
P 		57.5
(-3)
P 		73.8
(-1.5)
P 		63
C 113.7
(3)
P 		84.8
(-0.7)
P 		74.5
(-2.1)
P 		67.2
(-3)
P 		47
avr 115.2
(3) 		68.3
(-2.2) 		61.2
(-3) 		64.5
(-2.6) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 67.8
(-1.1)
P 		126.9
(3)
P 		40.3
(-3)
P 		73.9
(-0.7)
P 		98.6
(1)
P 		86.4
(0.2)
P 		87
B 113.5
(2.3)
P 		97.7
(0.4)
P 		68.5
(-3)
P 		72.4
(-2.5)
P 		119
(2.9)
P 		119.6
(3)
P 		51
C 127.1
(3)
P 		107.1
(1.4)
P 		80.1
(-0.7)
P 		50.7
(-3)
P 		90
(0.1)
P 		101.2
(1)
P 		76
avr 102.8
(2) 		110.6
(3) 		63
(-3) 		65.7
(-2.7) 		102.5
(2) 		102.4
(2) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190947_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6169
Sequence Type Exemplar sequence
Representative Public ID Y39A1A.15C NCBI
Target Description Y39A1A.15C /REP_DB=WormBase Gene ID /WP=CE20232 /TR=Q9XX09 /GB=CAA21032.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Ank repeat (2 domains)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027666(11), NM_001027665(11), NM_001027667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027666 NCBI Caenorhabditis elegans CeNTaurin family member (cnt-2) (cnt-2) mRNA, complete cds. 11/11 None
NM_001027665 NCBI Caenorhabditis elegans CeNTaurin family member (cnt-2) (cnt-2) mRNA, complete cds. 11/11 None
NM_001027667 NCBI Caenorhabditis elegans CeNTaurin family member (cnt-2) (cnt-2) mRNA, complete cds. 11/11 None
GENEFINDER00000012934 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10666837:10676645:1 10/11 None
SNAP00000012921 ENSEMBL cdna:SNAP chromosome:CEL140:III:10670141:10677031:1 11/11 None
Y39A1A.15b ENSEMBL cdna:known chromosome:CEL140:III:10655650:10677334:1 gene:Y39A1A.15 11/11 A 
Y39A1A.15a ENSEMBL cdna:known chromosome:CEL140:III:10663324:10677039:1 gene:Y39A1A.15 11/11 A 
Y39A1A.15c ENSEMBL cdna:known chromosome:CEL140:III:10666768:10677031:1 gene:Y39A1A.15 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027668 4/11 Cross Hyb Matching Probes None
GENEFINDER00000012941 1/11 Cross Hyb Matching Probes None
Y39A1A.15d 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176490 4 3 NM_001027665 190947_s_at (11), 193436_s_at (11)
NM_001027666 190947_s_at (11), 193436_s_at (11)
NM_001027667 190947_s_at (11), 193436_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10666832-10677027(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y39A1A.15
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21027 Hypothetical protein Y39A1A.15b [Caenorhabditis elegans] ref|NP_001022837.1| CeNTaurin family member (cnt-2) [Caenorhabditis elegans] 0.0
blast CAA10736 centaurin gamma 1A [Caenorhabditis elegans] 0.0
blast CAA21026 Hypothetical protein Y39A1A.15a [Caenorhabditis elegans] ref|NP_001022836.1| CeNTaurin family member (cnt-2) [Caenorhabditis elegans] 0.0
blast CAA10737 centaurin gamma 1B [Caenorhabditis elegans] 0.0
blast CAA21032 Hypothetical protein Y39A1A.15c [Caenorhabditis elegans] ref|NP_001022838.1| CeNTaurin family member (cnt-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001164 EMBL-EBI Human Rev interacting-like protein (hRIP) 6.2E-51
Pfam IPR002110 EMBL-EBI Ankyrin 6.5E-8
Pfam IPR002110 EMBL-EBI Ankyrin 0.52
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.5E-8
Pfam IPR001849 EMBL-EBI Pleckstrin-like 8.9E-16
Pfam IPR001164 EMBL-EBI Human Rev interacting-like protein (hRIP) 6.2E-51
Pfam IPR002110 EMBL-EBI Ankyrin 6.5E-8
Pfam IPR002110 EMBL-EBI Ankyrin 0.52
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.5E-8
Pfam IPR001849 EMBL-EBI Pleckstrin-like 8.9E-16
Pfam IPR001164 EMBL-EBI Human Rev interacting-like protein (hRIP) 6.2E-51
Pfam IPR002110 EMBL-EBI Ankyrin 6.5E-8
Pfam IPR002110 EMBL-EBI Ankyrin 0.52
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.5E-8
Pfam IPR001849 EMBL-EBI Pleckstrin-like 8.9E-16
Pfam IPR001164 EMBL-EBI Human Rev interacting-like protein (hRIP) 6.2E-51
Pfam IPR002110 EMBL-EBI Ankyrin 6.5E-8
Pfam IPR002110 EMBL-EBI Ankyrin 0.52
Pfam IPR001849 EMBL-EBI Pleckstrin-like 8.9E-16
Sequence
Target Sequence 
>C. ELEGANS:190947_S_AT
gaaggcgttcctgaagccaatcgcgtctggagaacctgtaacctctcagctcatttctgc
ggtgttggctcgggatgtgatgtcgcttaacgtgcttctggctaatggaatgtcggtgga
ggagatcaatacgactaccaaagacgggcggactgtacttcacttggctgccagtattgg
aagtgtcgagttggctcagctgcttatttggcacaacgccgacgcccaaatcctcgacaa
caatggtcgttcttgtcttttctacgctcgatccaacggtttccgagaagttttcgatat
gcttgtgacggctggcctgtcaccggactatggtctcccgcaggagatcaacgacttttc
ccagatgccagagtttttcgcaatgggatccacatcaaaccgggactattcgacgtccgg
cgacgagatgtacggctcacggcggatatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCGTTCCTGAAGCCAATCGCG 580 333 2196 Antisense
TGGAGAACCTGTAACCTCTCAGCTC 449 549 2223 Antisense
TCAGCTCATTTCTGCGGTGTTGGCT 380 623 2241 Antisense
GTTGGCTCGGGATGTGATGTCGCTT 407 435 2259 Antisense
GCTTAACGTGCTTCTGGCTAATGGA 211 305 2280 Antisense
AAAGACGGGCGGACTGTACTTCACT 558 123 2335 Antisense
AAGTGTCGAGTTGGCTCAGCTGCTT 123 159 2376 Antisense
TACGCTCGATCCAACGGTTTCCGAG 263 649 2458 Antisense
TTCGATATGCTTGTGACGGCTGGCC 588 691 2488 Antisense
AGGAGATCAACGACTTTTCCCAGAT 453 55 2537 Antisense
ATGTACGGCTCACGGCGGATATCAA 93 47 2623 Antisense
Sequence Source Affymetrix Proprietary Database