[Home] | [Total List]

[190945_at]

Description AC3.2 /REP_DB=WormBase Gene ID /WP=CE05132 /TR=Q17399 /GB=CAA94866.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.3
(-3)
A 		4.6
(1.2)
A 		5.6
(3)
A 		3
(-1.7)
A 		3
B 3.6
(-2.7)
A 		3.5
(-2.7)
A 		2.6
(-3)
A 		22.9
(3)
A 		20
C 3.2
(-2.3)
A 		4
(-1.9)
A 		2
(-3)
A 		12.5
(3)
A 		11
avr 3
(-3) 		4
(-2.4) 		3.4
(-2.8) 		12.8
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 4.2
(-2.5)
A 		5.5
(-2.2)
A 		2.2
(-3)
A 		9.1
(-1.3)
A 		27.2
(3)
A 		25.3
(2.5)
A 		25
B 18.2
(2.3)
A 		20.4
(3)
A 		3.5
(-2.8)
A 		5.1
(-2.2)
A 		2.8
(-3)
A 		6.9
(-1.6)
A 		18
C 2.5
(-2.7)
A 		4.6
(-2)
A 		2.3
(-2.7)
A 		12.5
(0.3)
A 		21.5
(3)
A 		1.4
(-3)
A 		20
avr 8.3
(-0.7) 		10.2
(0.1) 		2.7
(-3) 		8.9
(-0.4) 		17.2
(3) 		11.2
(0.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.8
(-0.8)
A 		1
(0.3)
A 		1.5
(3)
A 		0.4
(-3)
A 		1
B 1.2
(-2.2)
A 		0.9
(-2.6)
A 		0.6
(-3)
A 		4.9
(3)
A 		4
C 1.1
(-1.3)
A 		1.2
(-0.9)
A 		0.7
(-3)
A 		2.1
(3)
A 		1
avr 1
(-2.6) 		1
(-2.6) 		0.9
(-3) 		2.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.8
(-2.8)
A 		2
(-1.8)
A 		0.5
(-3)
A 		2.3
(-1.6)
A 		8.2
(3)
A 		6.2
(1.4)
A 		8
B 6.3
(2.5)
A 		6.8
(3)
A 		0.8
(-3)
A 		1.3
(-2.5)
A 		1.1
(-2.7)
A 		2.6
(-1.2)
A 		6
C 0.9
(-2.6)
A 		1.4
(-2.2)
A 		0.6
(-2.9)
A 		2.5
(-1.2)
A 		7
(3)
A 		0.5
(-3)
A 		7
avr 2.7
(-0.4) 		3.4
(0.5) 		0.6
(-3) 		2
(-1.3) 		5.4
(3) 		3.1
(0.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190945_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12492
Sequence Type Exemplar sequence
Representative Public ID AC3.2 NCBI
Target Description AC3.2 /REP_DB=WormBase Gene ID /WP=CE05132 /TR=Q17399 /GB=CAA94866.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026169(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026169 NCBI Caenorhabditis elegans AC3.9 (AC3.9) mRNA, complete cds. 11/11 None
SNAP00000028833 ENSEMBL cdna:SNAP chromosome:CEL140:V:10374922:10378807:1 11/11 None
AC3.9 ENSEMBL cdna:known chromosome:CEL140:V:10377582:10378807:1 gene:AC3.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028846 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10374260-10378807(+) 97.68 100.0
Public Domain and Genome References
Gene Title
Ensembl AC3.9
Entrez Gene 3565344 Entrez gene
SwissProt Q5FC63 EMBL-EBI
WormBase CE37873 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI46555 Hypothetical protein AC3.9 [Caenorhabditis elegans] ref|NP_001021340.1| AC3.9 [Caenorhabditis elegans] 0.0
blast CAA94866 Hypothetical protein AC3.2 [Caenorhabditis elegans] ref|NP_505666.2| AC3.2 [Caenorhabditis elegans] 0.0
blast CAE64828 Hypothetical protein CBG09624 [Caenorhabditis briggsae] 0.0
blast CAE56113 Hypothetical protein CBG23714 [Caenorhabditis briggsae] 0.0
blast CAA94866 Hypothetical protein AC3.2 [Caenorhabditis elegans] ref|NP_505666.2| AC3.2 [Caenorhabditis elegans] 1.0E-130
blast CAE64828 Hypothetical protein CBG09624 [Caenorhabditis briggsae] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-5
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.3E-6
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.7E-11
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.3E-25
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.7E-8
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.3E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000028833 2 361-383,473-495
Sequence
Target Sequence 
>C. ELEGANS:190945_AT
attggagctatccttattcatagatatgcaactgatagcacaacagaggtttttcgtaag
tacatcccagacttcccaaatgtcagagaaatcgctgcaaactcttcactttgctttgta
aattccgatgaagtacttgacttaccaaggcttactattactaaaactatttatgttggt
ggtctagggactccgaacataagccaacatttggacaatgtatttgccaaaataatgtcc
aaaggaaaacgaggtgttataataatatcgctaggatcatttgtgcaattcggagatttt
ccagttaatattaaaaaagaagtgttccgtgcaattagtgaattgtcagaatatcatttc
ctaattaaaatttccaaagatgacacgaacactaaaacgttgaccaaagaaatatccaat
gttgatcttgttcattggtttccacaagttgatcttctctccaatccaagattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGAGCTATCCTTATTCATAGAT 590 3 2335 Antisense
GAGGTTTTTCGTAAGTACATCCCAG 321 403 2380 Antisense
GACTTACCAAGGCTTACTATTACTA 304 193 2473 Antisense
GTTGGTGGTCTAGGGACTCCGAACA 260 435 2509 Antisense
GGGACTCCGAACATAAGCCAACATT 655 455 2521 Antisense
ATCGCTAGGATCATTTGTGCAATTC 456 37 2601 Antisense
GTGCAATTCGGAGATTTTCCAGTTA 287 481 2617 Antisense
AAGAAGTGTTCCGTGCAATTAGTGA 297 151 2651 Antisense
GTTGATCTTGTTCATTGGTTTCCAC 222 437 2755 Antisense
GGTTTCCACAAGTTGATCTTCTCTC 617 505 2771 Antisense
GATCTTCTCTCCAATCCAAGATTGA 79 419 2785 Antisense
Sequence Source Affymetrix Proprietary Database