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[190941_at]

Description F57B10.3 /REP_DB=WormBase Gene ID /WP=CE11302 /TR=O44742 /GB=AAB96720.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=phosphoglycerate mutase
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 26      6grp_total > 51      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5250
1 2 3 4 range
A 6570.7
(3)
P 		5306.3
(1.6)
P 		5004.7
(1.2)
P 		1320.5
(-3)
P 		5250
B 6147.5
(3)
P 		5110.5
(1.7)
P 		5111
(1.7)
P 		1386.9
(-3)
P 		4761
C 6408
(3)
P 		4912.9
(1.2)
P 		4902.5
(1.2)
P 		1390.4
(-3)
P 		5018
avr 6375.4
(3) 		5109.9
(1.5) 		5006.1
(1.4) 		1365.9
(-3) 		5010

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4129
1 2 3 4 5 6 range
A 6112.6
(0.5)
P 		6517.9
(1.5)
P 		7118.6
(3)
P 		6484.1
(1.4)
P 		5060
(-2)
P 		4664.2
(-3)
P 		2454
B 5753.2
(-0.2)
P 		5774.5
(-0.2)
P 		7700.9
(3)
P 		6187.2
(0.5)
P 		4839.6
(-1.7)
P 		4058.5
(-3)
P 		3642
C 5695.2
(-0.8)
P 		5450.3
(-1.2)
P 		8187.2
(3)
P 		6991.5
(1.2)
P 		5285.5
(-1.4)
P 		4267.5
(-3)
P 		3920
avr 5853.7
(-0.3) 		5914.2
(-0.2) 		7668.9
(3) 		6554.3
(1) 		5061.7
(-1.7) 		4330.1
(-3) 		3339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2199
1 2 3 4 range
A 2392.4
(3)
P 		1151.8
(-0.4)
P 		1308.3
(0)
P 		193.3
(-3)
P 		2199
B 1960.4
(3)
P 		1262.2
(0.5)
P 		1184.3
(0.2)
P 		295.6
(-3)
P 		1665
C 2121.2
(3)
P 		1412.5
(0.7)
P 		1708.7
(1.7)
P 		234.4
(-3)
P 		1887
avr 2158
(3) 		1275.5
(0.2) 		1400.4
(0.6) 		241.1
(-3) 		1917

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1191
1 2 3 4 5 6 range
A 1126.8
(-3)
P 		2318.1
(3)
P 		1550.3
(-0.9)
P 		1644.5
(-0.4)
P 		1526.9
(-1)
P 		1135.6
(-3)
P 		1191
B 2001.8
(3)
P 		1922.1
(2)
P 		1870
(1.4)
P 		1638.8
(-1.5)
P 		1966.3
(2.6)
P 		1513.4
(-3)
P 		488
C 2111
(3)
P 		1663
(-0.8)
P 		2083.8
(2.8)
P 		1406
(-3)
P 		1710.3
(-0.4)
P 		1428.6
(-2.8)
P 		705
avr 1746.5
(0.8) 		1967.7
(3) 		1834.7
(1.7) 		1563.1
(-1) 		1734.5
(0.7) 		1359.2
(-3) 		609
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1539
Sequence Type Exemplar sequence
Representative Public ID F57B10.3 NCBI
Target Description F57B10.3 /REP_DB=WormBase Gene ID /WP=CE11302 /TR=O44742 /GB=AAB96720.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=phosphoglycerate mutase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059495(11), NM_182051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059495 NCBI Caenorhabditis elegans F57B10.3a (F57B10.3) mRNA, complete cds. 11/11 None
NM_182051 NCBI Caenorhabditis elegans F57B10.3b (F57B10.3) mRNA, complete cds. 11/11 None
SNAP00000011835 ENSEMBL cdna:SNAP chromosome:CEL140:I:6578223:6580564:1 11/11 None
GENEFINDER00000011843 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6578223:6580564:1 11/11 None
F57B10.3a ENSEMBL cdna:known chromosome:CEL140:I:6577628:6580728:1 gene:F57B10.3 11/11 None
F57B10.3b.2 ENSEMBL cdna:known chromosome:CEL140:I:6577704:6580564:1 gene:F57B10.3 11/11 None
F57B10.3b.1 ENSEMBL cdna:known chromosome:CEL140:I:6577743:6580564:1 gene:F57B10.3 11/11 None
F57B10.3b.4 ENSEMBL cdna:known chromosome:CEL140:I:6578219:6580564:1 gene:F57B10.3 11/11 None
F57B10.3b.3 ENSEMBL cdna:known chromosome:CEL140:I:6578221:6580564:1 gene:F57B10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6577671-6580493(+) 100.0 100.0
Public Domain and Genome References
Ensembl F57B10.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT01444 cofactor-independent phosphoglycerate mutase [Caenorhabditis elegans] gb|AAB96720.1| Hypothetical protein F57B10.3a [Caenorhabditis elegans] ref|NP_491896.1| F57B10.3a [Caenorhabditis elegans] 0.0
blast AAO12419 Hypothetical protein F57B10.3b [Caenorhabditis elegans] ref|NP_871851.1| F57B10.3b [Caenorhabditis elegans] 0.0
blast CAE67217 Hypothetical protein CBG12654 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006124 EMBL-EBI Metalloenzyme 3.8E-58
Pfam IPR005995 EMBL-EBI Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1.0E-126
Pfam IPR006124 EMBL-EBI Metalloenzyme 3.8E-58
Pfam IPR005995 EMBL-EBI Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190941_AT
agaaaggtgtttagtgcccagtccaaaggtcgcaacttacgatcttcaaccagaaatgtc
tgcggccggcgttgctgacaaaatgattgaacaactcgaggctggaactcatccattcat
tatgtgcaactttgctccaccagatatggtcgggcatacgggagtctatgaagctgctgt
caaggcctgtgaagctactgatatcgcaatcggaagaatctatgaagcaactcaaaagca
cggatactcacttatggttactgctgatcacggaaatgctgaaaagatgaaggctccaga
tggtggaaaacacactgctcacacatgttaccgtgttccactcactttgagccatccagg
attcaaatttgtcgatccagccgaccgtcatccggccctttgtgatgttgctccaacagt
tctcgctattatgggactccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAAGGTGTTTAGTGCCCAGTCCA 234 71 1146 Antisense
GGTCGCAACTTACGATCTTCAACCA 227 503 1173 Antisense
CAACCAGAAATGTCTGCGGCCGGCG 204 187 1192 Antisense
GGAACTCATCCATTCATTATGTGCA 436 529 1249 Antisense
TATGTGCAACTTTGCTCCACCAGAT 19 657 1266 Antisense
ATGAAGCTGCTGTCAAGGCCTGTGA 515 43 1313 Antisense
GGATACTCACTTATGGTTACTGCTG 298 509 1387 Antisense
CACACTGCTCACACATGTTACCGTG 577 193 1456 Antisense
CAAATTTGTCGATCCAGCCGACCGT 201 193 1509 Antisense
GCCCTTTGTGATGTTGCTCCAACAG 330 287 1540 Antisense
AGTTCTCGCTATTATGGGACTCCCT 568 63 1563 Antisense
Sequence Source Affymetrix Proprietary Database